pfamBuilder {AnnBuilder} | R Documentation |
These functions builds a data package for Pfam database
pfamBuilder(pkgName="PFAM", pkgPath, version, author, fromWeb=TRUE, lazyLoad=TRUE, useTmp=FALSE, sqlFile=NULL)
pkgName |
pkgName a character string for the name of the
data package to be built. The default is "PFAM" |
pkgPath |
pkgPath a character string for the directory
where the data package to be built will be stored |
version |
version a character string for the version
number of the data package to be built |
author |
author a named vector of two character strings
with a name element for the name and an address element of email
address of the maintainer of the data package |
fromWeb |
fromWeb a boolean to indicate whether the data
from GO should be downloaded from the web or read locally. The url
for GO should be the file name of a local file if fromWeb is
FALSE. For windows users, the data file from GO should be
downloaded/unzipped manually and set the url for GO to be the name
of the local file |
lazyLoad |
lazyLoad a boolean indicating whether a lazy
load database will be created |
useTmp |
useTmp a boolean. If TREU, the sqlite file will
be saved to tempdir. Otherwise, it will be saved to the data
subdirectory of the package. The default is FALSE. |
sqlFile |
sqlFile a character string to indicate the full
path of the local SQL file. The default is NULL so that the
SQL file will be downloaded from the Pfam website |
Ting-Yuan Liu
http://www.sanger.ac.uk/Software/Pfam/
# Not provided.