checkMAPCOUNTS |
Check the SQL data contained in an SQLite-based annotation package |
class:AgiAnnDbMap |
Bimap objects and the Bimap interface |
class:AnnDbBimap |
Bimap objects and the Bimap interface |
class:AnnDbMap |
Bimap objects and the Bimap interface |
class:AnnDbObj |
AnnDbObj objects |
class:AnnDbPkgSeed |
Creates an SQLite-based annotation package |
class:Bimap |
Bimap objects and the Bimap interface |
class:Go3AnnDbBimap |
Bimap objects and the Bimap interface |
class:GoAnnDbBimap |
Bimap objects and the Bimap interface |
class:GOTerms |
Class "GOTerms" |
class:GOTermsAnnDbBimap |
Bimap objects and the Bimap interface |
class:IpiAnnDbMap |
Bimap objects and the Bimap interface |
colmetanames |
Methods for manipulating a Bimap object in a data-frame style |
colmetanames,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
colmetanames,FlatBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
colnames |
Methods for manipulating a Bimap object in a data-frame style |
colnames,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
colnames,FlatBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
contents,Bimap-method |
Environment-like API for AnnDbBimap objects |
count.links |
Methods for manipulating a Bimap object in a data-frame style |
count.links,Bimap-method |
Methods for manipulating a Bimap object in a data-frame style |
count.links,Go3AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
count.mappedkeys |
Methods for manipulating the keys of a Bimap object |
count.mappedkeys,ANY-method |
Methods for manipulating the keys of a Bimap object |
count.mappedkeys,Bimap-method |
Methods for manipulating the keys of a Bimap object |
count.mappedLkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
count.mappedLkeys,AgiAnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
count.mappedLkeys,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
count.mappedLkeys,Bimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
count.mappedLkeys,Go3AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
count.mappedRkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
count.mappedRkeys,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
count.mappedRkeys,AnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
count.mappedRkeys,Bimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
count.mappedRkeys,Go3AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
dbconn |
AnnDbObj objects |
dbconn,AnnDbObj-method |
AnnDbObj objects |
dbconn,environment-method |
AnnDbObj objects |
dbfile |
AnnDbObj objects |
dbfile,AnnDbObj-method |
AnnDbObj objects |
dbfile,environment-method |
AnnDbObj objects |
dbInfo |
AnnDbObj objects |
dbInfo,AnnDbObj-method |
AnnDbObj objects |
dbInfo,DBIConnection-method |
AnnDbObj objects |
dbInfo,environment-method |
AnnDbObj objects |
dbmeta |
AnnDbObj objects |
dbmeta,AnnDbObj-method |
AnnDbObj objects |
dbmeta,DBIConnection-method |
AnnDbObj objects |
dbmeta,environment-method |
AnnDbObj objects |
dbschema |
AnnDbObj objects |
dbschema,AnnDbObj-method |
AnnDbObj objects |
dbschema,DBIConnection-method |
AnnDbObj objects |
dbschema,environment-method |
AnnDbObj objects |
Definition |
Class "GOTerms" |
Definition,GOTerms-method |
Class "GOTerms" |
dim,Bimap-method |
Methods for manipulating a Bimap object in a data-frame style |
direction |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
direction,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
direction,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
direction<-,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
direction<-,AnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
direction<-,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
length,Bimap-method |
Methods for manipulating the keys of a Bimap object |
links |
Methods for manipulating a Bimap object in a data-frame style |
links,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
links,FlatBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
links,Go3AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
Lkeyname |
Methods for manipulating a Bimap object in a data-frame style |
Lkeyname,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
Lkeyname,Bimap-method |
Methods for manipulating a Bimap object in a data-frame style |
Lkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Lkeys,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Lkeys,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Lkeys<-,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Lkeys<-,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Llength |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Llength,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Llength,Bimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
loadAnnDbPkgIndex |
Creates an SQLite-based annotation package |
ls |
Environment-like API for AnnDbBimap objects |
ls,Bimap-method |
Environment-like API for AnnDbBimap objects |
makeAnnDbPkg |
Creates an SQLite-based annotation package |
makeAnnDbPkg,AnnDbPkgSeed-method |
Creates an SQLite-based annotation package |
makeAnnDbPkg,character-method |
Creates an SQLite-based annotation package |
makeAnnDbPkg,list-method |
Creates an SQLite-based annotation package |
makeARABIDOPSISCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
makeBOVINECHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
makeCANINECHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
makeCHICKENCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
makeECOLICHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
makeFLYCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
makeHUMANCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
makeMOUSECHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
makePIGCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
makeRATCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
makeWORMCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
makeYEASTCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
makeZEBRAFISHCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
make_eg_to_go_map |
Create GO to Entrez Gene maps for chip-based packages |
make_go_to_eg_map |
Create GO to Entrez Gene maps for chip-based packages |
mappedkeys |
Methods for manipulating the keys of a Bimap object |
mappedkeys,Bimap-method |
Methods for manipulating the keys of a Bimap object |
mappedkeys,environment-method |
Methods for manipulating the keys of a Bimap object |
mappedkeys,vector-method |
Methods for manipulating the keys of a Bimap object |
mappedLkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
mappedLkeys,AgiAnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
mappedLkeys,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
mappedLkeys,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
mappedLkeys,Go3AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
mappedRkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
mappedRkeys,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
mappedRkeys,AnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
mappedRkeys,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
mappedRkeys,Go3AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
mget |
Environment-like API for AnnDbBimap objects |
mget,AnnDbBimap-method |
Environment-like API for AnnDbBimap objects |
mget,ANY,AnnDbBimap-method |
Environment-like API for AnnDbBimap objects |
popARABIDOPSISCHIPDB |
Populates an SQLite DB with and produces a schema definition |
popBOVINECHIPDB |
Populates an SQLite DB with and produces a schema definition |
popBOVINEDB |
Populates an SQLite DB with and produces a schema definition |
popCANINECHIPDB |
Populates an SQLite DB with and produces a schema definition |
popCANINEDB |
Populates an SQLite DB with and produces a schema definition |
popCHICKENCHIPDB |
Populates an SQLite DB with and produces a schema definition |
popCHICKENDB |
Populates an SQLite DB with and produces a schema definition |
popECOLICHIPDB |
Populates an SQLite DB with and produces a schema definition |
popECOLIDB |
Populates an SQLite DB with and produces a schema definition |
popFLYCHIPDB |
Populates an SQLite DB with and produces a schema definition |
popFLYDB |
Populates an SQLite DB with and produces a schema definition |
popHUMANCHIPDB |
Populates an SQLite DB with and produces a schema definition |
popHUMANDB |
Populates an SQLite DB with and produces a schema definition |
popMALARIADB |
Populates an SQLite DB with and produces a schema definition |
popMOUSECHIPDB |
Populates an SQLite DB with and produces a schema definition |
popMOUSEDB |
Populates an SQLite DB with and produces a schema definition |
popPIGCHIPDB |
Populates an SQLite DB with and produces a schema definition |
popPIGDB |
Populates an SQLite DB with and produces a schema definition |
popRATCHIPDB |
Populates an SQLite DB with and produces a schema definition |
popRATDB |
Populates an SQLite DB with and produces a schema definition |
popWORMCHIPDB |
Populates an SQLite DB with and produces a schema definition |
popWORMDB |
Populates an SQLite DB with and produces a schema definition |
popYEASTCHIPDB |
Populates an SQLite DB with and produces a schema definition |
popYEASTDB |
Populates an SQLite DB with and produces a schema definition |
popZEBRAFISHCHIPDB |
Populates an SQLite DB with and produces a schema definition |
popZEBRAFISHDB |
Populates an SQLite DB with and produces a schema definition |
Rattribnames |
Methods for manipulating a Bimap object in a data-frame style |
Rattribnames,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
Rattribnames,Bimap-method |
Methods for manipulating a Bimap object in a data-frame style |
Rattribnames<-,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
Rattribnames<-,FlatBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
Rattribnames<-,Go3AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
revmap |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
revmap,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
revmap,Bimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
revmap,environment-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
revmap,list-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rkeyname |
Methods for manipulating a Bimap object in a data-frame style |
Rkeyname,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
Rkeyname,Bimap-method |
Methods for manipulating a Bimap object in a data-frame style |
Rkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rkeys,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rkeys,AnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rkeys,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rkeys,Go3AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rkeys<-,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rkeys<-,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rlength |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rlength,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rlength,AnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rlength,Bimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rlength,Go3AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
sample |
Environment-like API for AnnDbBimap objects |
sample,Bimap-method |
Environment-like API for AnnDbBimap objects |
sample,environment-method |
Environment-like API for AnnDbBimap objects |
Secondary |
Class "GOTerms" |
Secondary,GOTerms-method |
Class "GOTerms" |
show,AnnDbBimap-method |
Bimap objects and the Bimap interface |
show,AnnDbTable-method |
Methods for manipulating the keys of a Bimap object |
show,FlatBimap-method |
Bimap objects and the Bimap interface |
show,GOTerms-method |
Class "GOTerms" |
subset |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
subset,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
subset,Bimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
summary,AnnDbBimap-method |
Bimap objects and the Bimap interface |
summary,Bimap-method |
Bimap objects and the Bimap interface |
Synonym |
Class "GOTerms" |
Synonym,GOTerms-method |
Class "GOTerms" |