getAE {ArrayExpress}R Documentation

Download MAGE-TAB from ArrayExpress in a specified directory

Description

getAE downloads and extracts the MAGE-TAB files from an ArrayExpress data set.

Usage

getAE(input, path = ".", save = TRUE, type = "full")

Arguments

input is an ArrayExpress identifier.
path is the name of the directory in which the files downloaded on the ArrayExpress repository will be extracted.
save if TRUE, the files downloaded from the database will not be deleted from path after executing the function.
type can be 'raw' to download and extract only the raw data, 'processed' to download and extract only the processed data or 'full' to have both raw and processed data.

Value

A list with the names of the files that have been downloaded and extracted.

Author(s)

Audrey Kauffmann Maintainer: <audrey@ebi.ac.uk>

See Also

ArrayExpress, magetab2bioc, queryAE

Examples

TABM25 = getAE("E-TABM-25", type = "raw")

[Package ArrayExpress version 1.2.3 Index]