createIndex {ArrayTools} | R Documentation |
This HTML index file will link all the ouputted result, including Quality Assessment Report, differentially expressed genes, etc...
createIndex(..., mydir = getwd(), index.file = "index.html", createHeader = NULL)
... |
regressionResults or interactionResult |
mydir |
the directory to contain the index file |
index.file |
name of the index file |
createHeader |
If want to want to create an Header, such as your name, company names, etc... |
creating an HTML index-file in your directory
Xiwei Wu, Arthur Li
data(eSetExample) design<- new("designMatrix", target=pData(eSetExample), covariates = "Treatment") contrast<- new("contrastMatrix", design.matrix = design, compare1 = "Treated", compare2 = "Control") result<- regress(eSetExample, contrast) sigResult<- selectSigGene(result, fc.value=log2(2)) ## Not run: Output2HTML(sigResult) design.int<- new("designMatrix", target=pData(eSetExample), covariates = c("Treatment", "Group"), intIndex = c(1, 2)) contrast.int<- new("contrastMatrix", design.matrix = design.int, interaction=TRUE) result.int<- regress(eSetExample, contrast.int) sigResult.int <- selectSigGene(result.int) intResult <- postInteraction(eSetExample, sigResult.int, mainVar ="Treatment", compare1 = "Treated", compare2 = "Control") sigResultInt <- selectSigGeneInt(intResult) ## Not run: Output2HTML(sigResultInt) ## Not run: createIndex(sigResult, sigResultInt, createHeader = c("Arthur Li", "COH"))