createIngenuityFile {ArrayTools} | R Documentation |
A Wrapper Function to Create Files for Ingenuity Analysis
createIngenuityFile(..., mydir = getwd(), eSet, filename = "IngenuityFile")
... |
a list of regressResult class |
mydir |
the directory where you would like to store the file |
eSet |
an ExpressionSet |
filename |
file name |
This function enable to create the ingenuity upload file based on a list of regressResult
create an Ingenuity upload file
Xiwei Wu, Arthur Li
http://www.ingenuity.com/
data(eSetExample) design<- new("designMatrix", target=pData(eSetExample), covariates = "Treatment") contrast<- new("contrastMatrix", design.matrix = design, compare1 = "Treated", compare2 = "Control") result<- regress(eSetExample, contrast) ## Not run: createIngenuityFile(result, eSet = eSetExample)