Infrastructure for Biostrings-based genome data packages


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Documentation for package ‘BSgenome’ version 1.10.5

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$,BSgenome-method The BSgenome class
available.genomes available.genomes
available.SNPs SNP injection
bsapply bsapply
BSgenome The BSgenome class
BSgenome-class The BSgenome class
BSgenomeDataPkgSeed The BSgenomeForge functions
BSgenomeDataPkgSeed-class The BSgenomeForge functions
BSgenomeForge The BSgenomeForge functions
BSParams Class "BSParams"
BSParams-class Class "BSParams"
class:BSgenome The BSgenome class
class:BSgenomeDataPkgSeed The BSgenomeForge functions
class:BSParams Class "BSParams"
forgeBSgenomeDataPkg The BSgenomeForge functions
forgeBSgenomeDataPkg,BSgenomeDataPkgSeed-method The BSgenomeForge functions
forgeBSgenomeDataPkg,character-method The BSgenomeForge functions
forgeBSgenomeDataPkg,list-method The BSgenomeForge functions
forgeMasksFiles The BSgenomeForge functions
forgeSeqFiles The BSgenomeForge functions
forgeSeqlengthsFile The BSgenomeForge functions
getSeq getSeq
injectSNPs SNP injection
injectSNPs,BSgenome-method SNP injection
length,BSgenome-method The BSgenome class
masknames The BSgenome class
masknames,BSgenome-method The BSgenome class
mseqnames The BSgenome class
mseqnames,BSgenome-method The BSgenome class
names,BSgenome-method The BSgenome class
organism The BSgenome class
organism,BSgenome-method The BSgenome class
provider The BSgenome class
provider,BSgenome-method The BSgenome class
providerVersion The BSgenome class
providerVersion,BSgenome-method The BSgenome class
releaseDate The BSgenome class
releaseDate,BSgenome-method The BSgenome class
releaseName The BSgenome class
releaseName,BSgenome-method The BSgenome class
seqlengths The BSgenome class
seqlengths,BSgenome-method The BSgenome class
seqnames The BSgenome class
seqnames,BSgenome-method The BSgenome class
show,BSgenome-method The BSgenome class
SNPcount SNP injection
SNPcount,BSgenome-method SNP injection
SNPlocs SNP injection
SNPlocs,BSgenome-method SNP injection
SNPlocs_pkgname SNP injection
SNPlocs_pkgname,BSgenome-method SNP injection
sourceUrl The BSgenome class
sourceUrl,BSgenome-method The BSgenome class
species The BSgenome class
species,BSgenome-method The BSgenome class
[[,BSgenome-method The BSgenome class
[[<-,BSgenome-method The BSgenome class