Image processing and image analysis toolkit for R


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Documentation for package ‘EBImage’ version 2.6.0

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A B C D E F G H I M N O P R S T U W Z misc

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EBImage-package Package overview

-- A --

affinet Image transformation: rotation, resize, etc.
affinet,Image-method Image transformation: rotation, resize, etc.
animate Interactive image display
animate,array-method Interactive image display
animate,Image-method Interactive image display
animate,IndexedImage-method Interactive image display
Arith Generic methods for objects of class Image
as.Image Generic methods for objects of class Image
as.Image,array-method Generic methods for objects of class Image
as.Image,IndexedImage-method Defintion of class 'IndexedImage'
assert Image creation, copying and assertion
assert,Image,Image-method Image creation, copying and assertion
assert,Image,missing-method Image creation, copying and assertion
athresh Image and color channel thresholding
athresh,Image-method Image and color channel thresholding

-- B --

blur Noise removal, blurring and smoothing or images
blur,Image-method Noise removal, blurring and smoothing or images

-- C --

cgamma Enhancing images and colors
cgamma,Image-method Enhancing images and colors
channel Color and image color mode conversions
channel,ANY,character-method Color and image color mode conversions
channel,Image,character-method Color and image color mode conversions
channelMix Color and image color mode conversions
choose.image EBImage deprecated functions
chooseImage Image I/O
closing Morphological operations on images
closing,Image-method Morphological operations on images
cmoments Image moments and moment invariants, feature extraction
cmoments,IndexedImage,Image-method Image moments and moment invariants, feature extraction
cmoments,IndexedImage,missing-method Image moments and moment invariants, feature extraction
colorMode Defintion of class 'Image', its accessor methods
combine Image creation, copying and assertion
combine,Image,Image-method Image creation, copying and assertion
combine,list,missing-method Image creation, copying and assertion
compression Defintion of class 'Image', its accessor methods
contrast Enhancing images and colors
contrast,Image-method Enhancing images and colors
copy Image creation, copying and assertion
copy,Image-method Image creation, copying and assertion
cthresh Image and color channel thresholding
cthresh,Image-method Image and color channel thresholding

-- D --

denoise Noise removal, blurring and smoothing or images
denoise,Image-method Noise removal, blurring and smoothing or images
despeckle Noise removal, blurring and smoothing or images
despeckle,Image-method Noise removal, blurring and smoothing or images
dilate Morphological operations on images
dilate,Image-method Morphological operations on images
display Interactive image display
distmap Distance map transform of binary images
distmap,Image-method Distance map transform of binary images
drawfont Drawing primitives on images
drawtext Drawing primitives on images
drawtext,Image,list,list-method Drawing primitives on images
drawtext,Image,matrix,character-method Drawing primitives on images
drawtext,Image,numeric,character-method Drawing primitives on images

-- E --

EBImage Package overview
EBImage-deprecated EBImage deprecated functions
edge Segmentation and edge detection
edge,Image-method Segmentation and edge detection
edge.features EBImage deprecated functions
edge.features,IndexedImage-method EBImage deprecated functions
edge.profile EBImage deprecated functions
edge.profile,IndexedImage-method EBImage deprecated functions
edgeFeatures Extraction of edge profiles and edge features from images of indexed objects
edgeFeatures,IndexedImage-method Extraction of edge profiles and edge features from images of indexed objects
edgeProfile Extraction of edge profiles and edge features from images of indexed objects
edgeProfile,IndexedImage-method Extraction of edge profiles and edge features from images of indexed objects
enhance Enhancing images and colors
enhance,Image-method Enhancing images and colors
equalize Enhancing images and colors
equalize,Image-method Enhancing images and colors
erode Morphological operations on images
erode,Image-method Morphological operations on images

-- F --

features Feature extraction for objects in indexed images
features,IndexedImage-method Feature extraction for objects in indexed images
fileName Defintion of class 'Image', its accessor methods
fillHull Filling matrix data with flood fill algorithm
fillHull,IndexedImage-method Filling matrix data with flood fill algorithm
filter2 2D Convolution Filter
filter2,array,matrix-method 2D Convolution Filter
filter2,Image,matrix-method 2D Convolution Filter
filter2-methods 2D Convolution Filter
flip Image transformation: rotation, resize, etc.
flip,Image-method Image transformation: rotation, resize, etc.
floodFill Filling matrix data with flood fill algorithm
floodFill,array-method Filling matrix data with flood fill algorithm
flop Image transformation: rotation, resize, etc.
flop,Image-method Image transformation: rotation, resize, etc.
frameDist Calculate pairwise distances between image frames or frames of two images
frameDist,Image,Image-method Calculate pairwise distances between image frames or frames of two images
frameDist,Image,missing-method Calculate pairwise distances between image frames or frames of two images

-- G --

gblur Noise removal, blurring and smoothing or images
gblur,Image-method Noise removal, blurring and smoothing or images
getFeatures Feature extraction for objects in indexed images
getFeatures,IndexedImage-method Feature extraction for objects in indexed images
Grayscale Defintion of class 'Image', its accessor methods

-- H --

haralick.features EBImage deprecated functions
haralick.features,IndexedImage,Image-method EBImage deprecated functions
haralick.matrix EBImage deprecated functions
haralick.matrix,IndexedImage,Image-method EBImage deprecated functions
haralickFeatures Co-occurrence matrices (GLCM) and Haralick texture features
haralickFeatures,IndexedImage,Image-method Co-occurrence matrices (GLCM) and Haralick texture features
haralickMatrix Co-occurrence matrices (GLCM) and Haralick texture features
haralickMatrix,IndexedImage,Image-method Co-occurrence matrices (GLCM) and Haralick texture features
header Image creation, copying and assertion
header,Image-method Image creation, copying and assertion
hist,Image-method Generic methods for objects of class Image
hull.features EBImage deprecated functions
hull.features,IndexedImage-method EBImage deprecated functions
hullFeatures Extraction of hull features from images of indexed objects
hullFeatures,IndexedImage-method Extraction of hull features from images of indexed objects

-- I --

Image Image creation, copying and assertion
image,Image-method Generic methods for objects of class Image
Image-class Defintion of class 'Image', its accessor methods
imageData Defintion of class 'Image', its accessor methods
IndexedImage-class Defintion of class 'IndexedImage'
is.Image Image creation, copying and assertion

-- M --

matchObjects Matching objects in two indexed images
matchObjects,IndexedImage,IndexedImage-method Matching objects in two indexed images
median.Image Generic methods for objects of class Image
mediansmooth Noise removal, blurring and smoothing or images
mediansmooth,Image-method Noise removal, blurring and smoothing or images
mkball 2D Convolution Filter
mkbox 2D Convolution Filter
modulate Enhancing images and colors
modulate,Image-method Enhancing images and colors
moments Image moments and moment invariants, feature extraction
moments,Image,missing-method Image moments and moment invariants, feature extraction
moments,IndexedImage,Image-method Image moments and moment invariants, feature extraction
moments,IndexedImage,missing-method Image moments and moment invariants, feature extraction
morphKern Morphological operations on images

-- N --

negate Functions to normalize images
negate,Image-method Functions to normalize images
noise Noise removal, blurring and smoothing or images
noise,Image-method Noise removal, blurring and smoothing or images
normalize Functions to normalize images
normalize,Image-method Functions to normalize images
normalize2 Functions to normalize images
normalize2,Image-method Functions to normalize images

-- O --

opening Morphological operations on images
opening,Image-method Morphological operations on images

-- P --

paintObjects Marking detected objects in reference images
paintObjects,IndexedImage,Image-method Marking detected objects in reference images
print.Image Generic methods for objects of class Image
print.IndexedImage Generic methods for objects of class Image
propagate Voronoi-based segmentation on image manifolds
propagate,Image,IndexedImage-method Voronoi-based segmentation on image manifolds

-- R --

read.image EBImage deprecated functions
readImage Image I/O
reenumerate Object removal
reenumerate,IndexedImage-method Object removal
resample Image transformation: rotation, resize, etc.
resample,Image-method Image transformation: rotation, resize, etc.
resize Image transformation: rotation, resize, etc.
resize,Image-method Image transformation: rotation, resize, etc.
resolution Defintion of class 'Image', its accessor methods
rgbImage Color and image color mode conversions
rmObjects Object removal
rmObjects,IndexedImage,list-method Object removal
rmObjects,IndexedImage,numeric-method Object removal
rmoments Image moments and moment invariants, feature extraction
rmoments,IndexedImage,Image-method Image moments and moment invariants, feature extraction
rmoments,IndexedImage,missing-method Image moments and moment invariants, feature extraction
rotate Image transformation: rotation, resize, etc.
rotate,Image-method Image transformation: rotation, resize, etc.

-- S --

segment Segmentation and edge detection
segment,Image-method Segmentation and edge detection
sharpen Noise removal, blurring and smoothing or images
sharpen,Image-method Noise removal, blurring and smoothing or images
show,Image-method Generic methods for objects of class Image
smoments Image moments and moment invariants, feature extraction
smoments,IndexedImage,Image-method Image moments and moment invariants, feature extraction
smoments,IndexedImage,missing-method Image moments and moment invariants, feature extraction
stackObjects Generate a stack of images for detected objects, one object per image
stackObjects,IndexedImage,Image,character-method Generate a stack of images for detected objects, one object per image
stackObjects,IndexedImage,Image,list-method Generate a stack of images for detected objects, one object per image
stackObjects,IndexedImage,Image,missing-method Generate a stack of images for detected objects, one object per image
stackObjects,IndexedImage,Image,numeric-method Generate a stack of images for detected objects, one object per image
stopIfNotImage Image creation, copying and assertion

-- T --

thresh Image and color channel thresholding
thresh,Image-method Image and color channel thresholding
tile Generate a tiled image from a stack of images
tile,Image-method Generate a tiled image from a stack of images
tile,list-method Generate a tiled image from a stack of images
TrueColor Defintion of class 'Image', its accessor methods

-- U --

umask Noise removal, blurring and smoothing or images
umask,Image-method Noise removal, blurring and smoothing or images
untile Generate a tiled image from a stack of images
untile,Image,numeric-method Generate a tiled image from a stack of images

-- W --

watershed Watershed transformation and watershed based object detection
watershed,Image-method Watershed transformation and watershed based object detection
write.image EBImage deprecated functions
write.image,Image-method EBImage deprecated functions
writeImage Image I/O
writeImage,Image-method Image I/O

-- Z --

zernike.moments EBImage deprecated functions
zernike.moments,IndexedImage,Image-method EBImage deprecated functions
zernikeMoments Extraction of Zernike moments from images of indexed objects
zernikeMoments,IndexedImage,Image-method Extraction of Zernike moments from images of indexed objects

-- misc --

[,Image-method Generic methods for objects of class Image