alleleSummary {GeneticsBase} | R Documentation |
Summary of allele information.
alleleSummary(object, by = NULL, confidence = 0.95, alpha = 1 - confidence, show = TRUE, verbose = FALSE, includeOverall = FALSE, omitRepeats = TRUE, ...)
object |
geneSet object |
by |
optional column name, by which the summary is desired. Default is NULL. |
confidence |
confidence intervals of Genotype frequencies within each marker (default is 95%) |
alpha |
Type -1 error rate = (1- confidence) |
show |
No longer used |
verbose |
Logical value (TRUE/FALSE), showing whether every 50th marker should be printed, default = FALSE |
includeOverall |
logical value (TRUE/FALSE) indicating whether overall summary is also needed, default = FALSE |
omitRepeats |
logical value (TRUE/FALSE) indicating whether Gene name and marker name should be printed repeatedly for each Genotype, default = TRUE |
... |
Optional arguments |
Nitin Jain nitin.jain@pfizer.com
library(GeneticsBase) data(CAMP) temp <- alleleSummary(CAMP) print(temp) # display txt(temp, filename="alleleSummary.txt") # txt file html(temp, filename="alleleSummary.html") # html file latex(temp, filename="alleleSummary.tex") # latex file