LD-class {GeneticsBase}R Documentation

Class "LD" ~~~

Description

~~ A concise (1-5 lines) description of what the class is. ~~

Objects from the Class

Objects can be created by calls of the form new("LD", ...). ~~ describe objects here ~~

Slots

call:
Function call used to generate this object.
D:
Linkage disequilibrium estimate
D':
Scaled linkage disequilibrium estimate
r:
Correlation coefficient
R^2:
squared correlation coefficient
n:
Number of observations
X^2:
Chi-square statistic for linkage equilibrium (i.e., D=D'=corr=0)
P-value:
Chi-square p-value for marker independence
LOD:
LOD scores

Methods

head
signature(x = "LD"): ...
html
signature(x = "LD"): ...
latex
signature(x = "LD"): ...
left
signature(x = "LD"): ...
plot
signature(x = "LD"): ...
right
signature(x = "LD"): ...
show
signature(object = "LD"): ...
tail
signature(x = "LD"): ...

Note

~~further notes~~

Author(s)

Gregory R. Warnes warnes@bst.rochester.edu and Nitin Jain nitin.jain@pfizer.com

Examples

##---- Should be DIRECTLY executable !! ----

[Package GeneticsBase version 1.8.0 Index]