markerSummary {GeneticsBase} | R Documentation |
Generate allele, genotype, or LD summary objects
markerSummary(object, covariate = NULL, confidence = 0.95, alpha = 1 - confidence, show = TRUE, ...) ## S3 method for class 'markerSummary': print(x, ...)
object |
|
covariate |
|
confidence |
desired confidence interval for genotype and allele frequencies in each marker |
alpha |
Type -1 error rate = (1- confidence) |
show |
No longer used |
x |
object of class 'markerSummary' |
... |
optional additional arguments |
We can print the alleleSummary and genotypeSummary on screen, or save in html, tex, or pdf format using appropriate methods.
Nitin Jain nitin.jain@pfizer.com
library(GeneticsBase) data(CAMP) temp <- markerSummary(CAMP) print.markerSummary(temp) html.markerSummary(temp, filename="test") latex.markerSummary(temp, filename="test")