makeTranscript {GenomeGraphs} | R Documentation |
Creates an object of class Transcript. This represents all known transcript structures in Ensembl.
makeTranscript(id, type, biomart, dp = NULL)
id |
An identifier used to specify of which gene/transcript the transcript structures should be retrieved |
type |
The type of identifiers used, examples are ensembl_gene_id, hgnc_symbol,entrezgene. See listAttributes function of thebiomaRt package for more info |
biomart |
Mart object, created by the useMart function of biomaRt |
dp |
object of class DisplayPars, determines the display of features on the plot |
An object of class Transcript
Steffen Durinck and Jim Bullard
~put references to the literature/web site here ~
##---- Should be DIRECTLY executable !! ---- ##-- ==> Define data, use random, ##-- or do help(data=index) for the standard data sets. ## The function is currently defined as function (id, type, biomart, dp = NULL) { if (missing(id)) stop("Need to specify a gene identifier for creating a Transcript") pt <- getClass("Transcript")@prototype if (is.null(dp)) dp <- pt@dp if (missing(type)) type = pt@type new("Transcript", id = id, type = type, biomart = biomart, dp = dp) }