samplePointMatrix-class {KCsmart} | R Documentation |
Sample point matrix
Description
A sample point matrix resulting from a call to calcSpm
Objects from the Class
Objects can not be created by the user directly but rather through calcSpm.
Slots
totalLength
:- The total length of the sample point matrix, measures in sample points
maxy
:- The maximum KC score attained over the sample point matrix
miny
:- The minimum KC score attained over the sample point matrix
sampleDensity
:- The sample density used to calculate the sample point matrix. ie the distance between two points in the sample point matrix, measured in base pairs.
sigma
:- The sigma used for the kernel to calculate the sample point matrix.
mirrorLocs
:- The mirror locations list used to calculate the sample point matrix
probeAnnotation
:- The original probe annotation from the input data.
data
:- The sample point matrix data points in the form of a list where each list element represents a chromosome.
Methods
- plot
signature(x = "samplePointMatrix")
: ...
- show
signature(object = "samplePointMatrix")
: ...
Examples
showClass("samplePointMatrix")
[Package
KCsmart version 1.6.0
Index]