sort.arrayCGH {MANOR}R Documentation

Sort for normalized arrayCGH objects

Description

Sorts clone-level information of a normalized arrayCGH object.

Usage

  ## S3 method for class 'arrayCGH':
  sort(x, decreasing = FALSE, position.var="Position",
    chromosome.var="Chromosome", ...)

Arguments

x an object of type arrayCGH.
decreasing (for compatibility with sort class) currently unused.
position.var name of position variable.
chromosome.var name of chromosome variable.
... further arguments to be passed to sort.

Note

People interested in tools for array-CGH analysis can visit our web-page: http://bioinfo.curie.fr.

Author(s)

Pierre Neuvial, manor@curie.fr.

See Also

norm.arrayCGH

Examples

data(spatial)

## sort a normalized array by clone position
gradient.norm <- sort.arrayCGH(gradient.norm)

report.plot(gradient.norm, main="Genomic profile after normalization")

[Package MANOR version 1.14.0 Index]