MANOR: analysis of an array with spatial gradient

2009-04-14, 15:32:06
Profile after normalization: 3226 clones (97%)
<image with normalization>

Spot-level flag report

Flag label Flag code Parameter Flagged spots Flagged spots(%)
Local bias S - 0 0
Image analysis G - 61 1
Low signal to noise ratio B 3 0 0
Bad quality clone V 2 204 2
No genome position P - 0 0
Unique spot U - 1 0
Amplicon A 1 0 0
Poor replicate consistency E 0.1 551 5
not flagged OK - 9983 92

Quality criteria

LabelValue
Local signal variability along the genome 0.033
Average variability among replicates 0.05
Dynamics of the DNA copy number variation 0.295