buildFDMat {PCpheno} | R Documentation |
Function to build a fitness defect contingency matrix where rows correspond to tested genes and columns to experimental conditions.
buildFDMat(data,genenames,condition)
data |
List of 'significant' fitness defect scores and the associated genes at different experimental conditions. |
condition |
Character vector of the different experimental conditions tested |
genenames |
Character vector of all the tested genes for fitness defect. |
Contingency matrix of genes that present significant fitness defect in different experimental conditions.
N. LeMeur
data(GiaeverPheno) data(GiaeverExpCdt) data(GiaeverGene) fitnessData <- getFDgene(GiaeverPheno,condition=GiaeverExpCdt,cutoff=c(20,100,100),mode="generation",subset=c(5,15,20)) GiaeverPhenoM <- buildFDMat(data=fitnessData,genenames=GiaeverGene,condition=GiaeverExpCdt[,3])