writeGmt {PGSEA} | R Documentation |
This function writes out SMC objects into .gmt file format
writeGmt(fname, cl)
fname |
name of the file to be written out |
cl |
list of SMC objects |
The .gmt file format is a tab delimited file format used to store gene lists. These gene lists are stored row by row. The first column is the gene set name. The second column is a brief description, and every entry after that is a gene within that gene set.
Kyle Furge <kyle.furge@vai.org> and Karl Dykema <karl.dykema@vai.org>
http://www.broad.mit.edu/gsea/doc/data_formats.html#gmt
datadir <- system.file("data", package = "PGSEA") sample <- readGmt(file.path(datadir, "sample.gmt")) str(sample) ## Not run: writeGmt(paste(datadir,"/output.gmt",sep=""),sample) ## End(Not run)