kegg2smc {PGSEA}R Documentation

KEGG pathway to "smc"

Description

This function creates "smc" objects from the "KEGG" Bioconductor library.

Usage

smc <- kegg2smc(min = 1, max = 284,organism="human")

Arguments

min numeric - minimum length of ids to be included
max numeric - maximum length of ids to be included
organism character - organism

Value

a list of "smc" objects

Author(s)

Karl Dykema <karl.dykema@vai.org> and Richard Birnie <richard.birnie@pro-curetherapeutics.com>

Examples

        if(require(KEGG)){
                mcs <- kegg2smc(min=20,max=284)
                length(mcs)
                str(mcs[[1]])
        }

[Package PGSEA version 1.10.0 Index]