ftr2xys {Ringo} | R Documentation |
Auxiliary function to convert a NimbleScan feature-report
file
into a xys-file that can be used with the function
read.xysfiles
of package oligo
.
ftr2xys(ftr.file, path=getwd())
ftr.file |
character; file path of feature report file to convert into an xys file |
path |
file path to directory where the xys-file should be written to; defaults to the current working directory |
The output file is names as the input ftr file; with the file
extension .ftr
replaced by .xys
.
Function returns only NULL
invisibly and is only called for
its side effect to write the xys-file into the current
working directory.
This function should only be used with one-color Nimblegen
microarrays and when the correct xys-file of the raw
data is not available. The output file can be used with the function
read.xysfiles
of package oligo
.
Joern Toedling toedling@ebi.ac.uk
## Not run: sapply(list.files(pattern=".ftr$"),ftr2xys) library(oligo) fs = read.xysfiles(list.xysfiles()) ## End(Not run)