psi25interaction {Rintact} | R Documentation |
The PSI-MI 2.5 XML format is used by EBI IntAct database to record
protein-protein interaction data and protein complex data.
psi25interaction
is the parser for interaction data and
psi25complex
is the parser for complex data.
psi25interaction(intactFile) psi25complex(intactFile)
intactFile |
character, file name or URL of the XML document |
psi25interaction
returns a list of interactionEntry
objects, each represents one entry
in the XML document.
psi25complex
returns an complexEntry
object, which
represents the data from one XML document.
Nianhua Li
The IntAct Database http://www.ebi.ac.uk/intact/site/contents/downloads.jsf.
interactionEntry-class
, complexEntry-class
# parse complex data fn <- system.file("PSI25XML/complexSample.xml", package="Rintact") complexData <- psi25complex(fn) complexData # parse interaction data fn <- system.file("PSI25XML/interactionSample.xml", package="Rintact") interactionData <- psi25interaction(fn) interactionData