psimi25Graph-class {RpsiXML} | R Documentation |
A graph object representing data extracted from PSI-MI 2.5 files
Objects can be created by calls of the form psimi25XML2Graph
interactors
:"matrix"
,
interactor information in a matrix, Each row represents one
interactor. Source IDs are used as row names. Each column represents one annotation.
Annotations include: UniProt ID, short label, organism name, and NCBI taxonomy ID. Only those interactors which are
the nodes of the psimi25Graph is given.
Class graphNEL
, directly.
Class graphNEL
, by class "graphNEL", distance 2.
signature(object = "psimi25Graph")
: show method signature(r = "psimi25Graph")
:
translate the source ID into other IDs signature(object="psimi25Graph")
: get the
abstract information for the dataset from NCBITony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <j.zhang@dkfz.de>
psimi25XML2Graph
,S4classpsimi25Hypergraph-class
showClass("psimi25Graph")