complexName {RpsiXML} | R Documentation |
These functions are used to extract useful information of complex in
the form of psimi25Complex-class
object.
complexName(x) complexMembers(x) complexAttributes(x)
x |
An object of psimi25Complex-class |
See examples
complexName |
Returns the name of the complex in characters |
complexMembers |
A data frame of protein members building the complex and their information |
complexAttributes |
A named vector of character strings, the names are the attribute names while the values are attributes documented in the PSI-MI 2.5 file |
Jitao David Zhang <j.zhang@dkfz.de>, Tony Chiang <tchiang@ebi.ac.uk>
xmlDir <- system.file("/extdata/psi25files",package="RpsiXML") intactComplexxml <- file.path(xmlDir,"intact_complexSample.xml") intactComplexSet <- parsePsimi25Complex(intactComplexxml, INTACT.PSIMI25) complexSample <- complexes(intactComplexSet)[[2]] complexName(complexSample) complexAttributes(complexSample) complexMembers(complexSample)