psimi25Graph-class {RpsiXML}R Documentation

Class "psimi25Graph" ~~~

Description

A graph object representing data extracted from PSI-MI 2.5 files

Objects from the Class

Objects can be created by calls of the form psimi25XML2Graph

Slots

interactors:
Object of class "matrix", interactor information in a matrix, Each row represents one interactor. Source IDs are used as row names. Each column represents one annotation. Annotations include: UniProt ID, short label, organism name, and NCBI taxonomy ID. Only those interactors which are the nodes of the psimi25Graph is given.

Extends

Class graphNEL, directly. Class graphNEL, by class "graphNEL", distance 2.

Methods

show
signature(object = "psimi25Graph"): show method
translateSourceID
signature(r = "psimi25Graph"): translate the source ID into other IDs
abstract
signature(object="psimi25Graph"): get the abstract information for the dataset from NCBI

Author(s)

Tony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <j.zhang@dkfz.de>

See Also

psimi25XML2Graph,S4classpsimi25Hypergraph-class

Examples

showClass("psimi25Graph")

[Package RpsiXML version 1.0.0 Index]