parseComplex {RpsiXML}R Documentation

Parse complex, interactor and experiment from PSI-MI 2.5 XML node

Description

Wrappers of internal functions (".parsePsimi25Complex", ".parsePsimi25Interactor", ".parsePsimi25Experiment") to parse nodes from PSI-MI 2.5 XML node. By default these parsers is used in objects of psimi25Source-class without any modification. Though they can be overwritten in these objects in special cases, it is not advisory to do so due to the compatibility.

Usage

parseComplex(x, ...)
parseInteractor(x, ...)
parseExperiment(x, ...)

Arguments

x An object of the psimi25Source-class
... Parameters passed to internal functions

Value

Object of psimi25Complex-class, \code{psimi25Interactor-class} or \code{psimi25Experiment-class}

Note

An newly initialized instance of psimi25Source-class contains the default form of these functions. Though they are allowd to be overwritten, it is not advisory to do so since this means the file to parse is not fully compatible with PSI-MI 2.5 standard. It is more sensible to contact the data provider before modifying or overwritting these functions.

Author(s)

Jitao David Zhang <j.zhang@dkfz.de>, Tony Chiang <tchiang@ebi.ac.uk>


[Package RpsiXML version 1.0.0 Index]