SGD.SL {SLGI} | R Documentation |
The Saccharomyces Genome Database (SGD)
provides, for download a table listing all known interactions in
yeast. This table was downloaded on Jan 25, 2007 and three subsets were
extracted. The synthetic lethal interactions, SGD.SL
, the
synthetic grow defect interactions, SGD.SynGrowthDefect
and the
synthetic rescue interactions, SGD.SynRescue
. No other processing
has been done.
data(SGD.SL) data(SGD.SynRescue) data(SGD.SynGrowthDefect)
Each data set is a data frame with the following 7 variables.
V1
V2
V3
V4
V5
V6
V7
BioGRID
, probably
indicating the source.SGD says this about the file:
Contains interaction data. Tab-separated columns are: 1) interaction_type (mandatory) 2) genes involved and their mutation type, in the format: ORF (mutation_type, action), with multiples separated by a | 3) phenotype (optional, multiples separated by |) 4) description (optional) 5) citation (multiples separated by |) 6) PubMed ID (optional, multiples separated by |) This file is updated weekly.
Z. Jiang
The file can be downloaded from, ftp://genome-ftp.stanford.edu/pub/yeast/literature_curation.
data(SGD.SL)