getUniquePairs {SLGI} | R Documentation |
getUniquePairs
can find all the unique pairs from an
interaction matrix and supplementary array genes, or finds only the
unique pairs that shows positive interaction.
getUniquePairs(iMat, respV = character(0), only = FALSE)
iMat |
Adjacency matrix reporting genetic Interactions. Each entry has value 0 or 1, representing positive or negative interaction of corresponding pairs of row and column, respectively. |
respV |
Character vector of all gene names that were tested (found to interact or not) |
only |
has default value FALSE , if TRUE , then only
reports the positively interacted pairs. |
A data.frame with two or three columns. The first two columns are the
query gene name and the array gene name, respectively. If only
is TRUE
, the third column shows the interaction status.
Z. Jiang
intM <- c(0,1,0,0,1,1,0,0,1,0,0,1,1,0,1,0) dim(intM) <- c(4,4) dimnames(intM) <- list(c("p1","p2","p3","p4"),c("p1","p3","p5","p7") ) respV <- c("p6","p8") intM getUniquePairs(intM,respV,only=FALSE) getUniquePairs(intM,respV,only=TRUE) getUniquePairs(intM,only=FALSE) getUniquePairs(intM,only=TRUE)