SMAPObservations-class {SMAP} | R Documentation |
Holds observed microarray intensity ratios and clone annotations for the SMAP package.
Objects can be created by calls of the form
new("SMAPObservations", value, chromosome, startPosition,
endPosition, name, reporterId)
. You can also use the convenience
function SMAPObservations
.
value
:"numeric"
Microarray
intensity ratios.chromosome
:"character"
Associated chromosomes for the observations.startPosition
:"numeric"
Associated start positions for the observations.endPosition
:"numeric"
Associated end positions for the observations.reporterId
:"character"
Identifiers of the observations, e.g., probe ids.name
:"character"
An identifier
of the observation set.noObservations
:"numeric"
The
number of observations in the set.signature(object = "SMAPObservations")
: Returns
the values of the observations.signature(object = "SMAPObservations")
:
Returns the chromosome annotations of the observations.signature(object = "SMAPObservations")
:
Returns the start positions of the observations.signature(object = "SMAPObservations")
:
Returns the end positions of the observations.signature(object = "SMAPObservations")
:
Returns the identifiers of the observations.signature(object = "SMAPObservations")
: Returns
the name of the observation set.signature(object = "SMAPObservations")
:
Returns the number of observations in the set.signature(.Object = "SMAPObservations")
:
Creates an instance.signature(x = "SMAPObservations", y = "missing")
:
A plot method for the observations.signature(x = "SMAPPObservations")
: Creates a new
object of class SMAPObservations with extracted elements as
specified by the indices provided.Robin Andersson, robin.andersson@lcb.uu.se
Andersson, R., Bruder, C. E. G., Piotrowski, A., Menzel, U., Nord, H., Sandgren, J., Hvidsten, T. R., Diaz de Stahl, T., Dumanski, J. P., Komorowski, J., A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling, submitted