SMAPProfile-class {SMAP} | R Documentation |
Holds results from running smap
.
Objects are not intended to be created directly but as a result from
running smap.
HMM
:"SMAPHMM"
observations
:"SMAPObservations"
P
:"numeric"
The log joint
posterior probability of the state sequence Q
and
parameters of HMM
given the observations
.Q
:"numeric"
The optimal state
sequance (path) in the HMM.name
:"character"
The name of
the object.signature(object = "SMAPProfile")
: Returns the log
joint posterior probability. signature(object = "SMAPProfile")
: Returns the
optimal state sequence.signature(object = "SMAPProfile")
: Returns the
optimized HMM.signature(object = "SMAPProfile")
: Returns the
name of the profile.signature(object = "SMAPProfile")
:
Returns the observations.signature(x = "SMAPProfile", y = "missing")
: A
plot method for the result profile.signature(x = "SMAPProfile")
: Creates a new object
of class SMAPProfile with extracted elements as specified by the
indices provided.Robin Andersson, robin.andersson@lcb.uu.se
Andersson, R., Bruder, C. E. G., Piotrowski, A., Menzel, U., Nord, H., Sandgren, J., Hvidsten, T. R., Diaz de Stahl, T., Dumanski, J. P., Komorowski, J., A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling, submitted