scaleTransitionProbability {VanillaICE}R Documentation

Scales the probability of transitioning between two states in the Viterbi algorithm

Description

Function only returns a matrix of 1's (by default, no scaling of the transition probabilities). This may be changed in future releases.

Usage

scaleTransitionProbability(states, SCALE = 2, normalLabel = "N")

Arguments

states character string of hidden states
SCALE Numeric. See details.
normalLabel Character: label used for the baseline state.

Value

A matrix of dimension S x S, where S is the number of states. The diagonal should always be 1 (we do not scale the probability of remaining in the same state). A slot for storing this matrix is provided in the HmmParameter class.

Author(s)

RS

See Also

genomicDistance, transitionScale, HmmParameter-class


[Package VanillaICE version 1.4.0 Index]