copyNumber.emission {VanillaICE}R Documentation

Calculate emission probabilities for copy number

Description

Calculate emission probabilities for the copy number

Usage

copyNumber.emission(object)

Arguments

object Instance of class HmmOptions

Details

If copyNumber.ICE = TRUE in the HmmOptions object, then the emission probabilities for the copy number estimates take into account the confidence scores stored in the cnConfidence slot of the object inherting from class SnpLevelSet. The confidence scores are assumed to be inverse standard errors.

Value

Array of emission probabilities for the copy number estimates (on the log scale)

Author(s)

R. Scharpf

See Also

copyNumber.ICE


[Package VanillaICE version 1.4.0 Index]