calls.ICE {VanillaICE}R Documentation

Indicates whether to use confidence scores of the observed copy number estimates in the HMM

Description

In the current framework, the confidence scores are assumed to be the inverse of the standard error

Usage

calls.ICE(object)
calls.ICE(object) <- value

Arguments

object An object of class HmmOptions
value Logical. If TRUE, confidence scores of the genotype calls are used to calculate emission probabilities

Value

Logical

Author(s)

R. Scharpf

See Also

See the VanillaICE vignette


[Package VanillaICE version 1.4.0 Index]