HmmParameter-class {VanillaICE} | R Documentation |
Parameters needed for the Viterbi algorithm, including emission probabilities, the genomic distance, and the initial state probabilities
Objects can be created by calls of the form new("HmmParameter", states, initialStateProbability, emission, genomicDistance, transitionScale)
.
states
:"character"
initialStateProbability
:"numeric"
emission
:"array"
genomicDistance
:"numeric"
transitionScale
:"matrix"
signature(x = "HmmParameter")
: signature(object = "HmmParameter")
: signature(object = "HmmParameter", value = "array")
: signature(object = "HmmParameter")
: signature(object = "HmmParameter", value = "numeric")
: signature(object = "HmmOptions", params = "HmmParameter")
: signature(.Object = "HmmParameter")
: signature(object = "HmmParameter")
: signature(object = "HmmParameter")
: signature(object = "HmmParameter")
: signature(object = "HmmParameter", value = "character")
: signature(object = "HmmParameter")
: signature(object = "HmmParameter")
: signature(object = "HmmParameter", value = "matrix")
: See HmmParameter vignette
RS
showClass("HmmParameter")