calculateDistance {VanillaICE} | R Documentation |
Calculates the distance between adjacent SNPs.
calculateDistance(object) physicalDistance(object)
object |
Object inheriting from SnpLevelSet |
Calculates the physical distance between adjacent SNPs along a chromosome.
A vector of integers
The transition probabilities in the Viterbi algorithm are calculated as a function of the physical distance (d) between adjacent SNPs.
probability of staying in state S = exp(-2 * d/100*1e6)
R. Scharpf