copynumberEmission {VanillaICE}R Documentation

Emission probabilities for copy number

Description

Emission probabilities for copy number

Usage

copynumberEmission(copynumber, states, mu, uncertainty, takeLog, verbose = TRUE)

Arguments

copynumber class matrix
states class character
mu class numeric: mean of hidden states for Gaussian
uncertainty uncertainty of copy number estimates
takeLog whether to take the log of the copy number AND the mu argument
verbose logical

Value

array Array of emission probabilities. Dimension 1: SNPs, Dimension 2: samples, Dimension3: states

[Package VanillaICE version 1.4.0 Index]