copynumberEmission {VanillaICE} | R Documentation |
Emission probabilities for copy number
Description
Emission probabilities for copy number
Usage
copynumberEmission(copynumber, states, mu, uncertainty, takeLog, verbose = TRUE)
Arguments
copynumber |
class matrix |
states |
class character |
mu |
class numeric: mean of hidden states for Gaussian |
uncertainty |
uncertainty of copy number estimates |
takeLog |
whether to take the log of the copy number AND the mu argument |
verbose |
logical |
Value
array |
Array of emission probabilities. Dimension 1: SNPs, Dimension 2: samples, Dimension3: states |
[Package
VanillaICE version 1.4.0
Index]