HmmPredict-class {VanillaICE} | R Documentation |
Contains the predictions for the hidden states and a list of breakpoint matrices. Each element in the list corresponds to the breakpoints identified in one sample.
Objects can be created by calls of the form new("HmmPredict", states, predictions, breakpoints, SnpClass)
.
states
:character
. Character
string of the hidden states.predictions
:matrix
. Matrix
of predictions.breakpoints
:list
. List of
matrices. Each element is the matrix of breakpoints for one sample.SnpClass
:character
. The
class of SNP data (e.g., oligoSnpSet
) featureData
:AnnotatedDataFrame
signature(object = "HmmPredict")
: Accessor
for class of SNP datasignature(x = "HmmPredict")
: Subsetting the predictionssignature(object = "HmmPredict")
: Accessor
for the list of breakpointssignature(object = "HmmPredict", value = "data.frame")
:
Replacement method for breakpointssignature(object="HmmPredict")
: Accessor for the
data frame of all feature-level (SNP-level) annotation (e.g., physical
position)signature(object = "HmmPredict")
: Accessor
for the featureDatasignature(object = "HmmPredict")
:
Character string of SNP identifierssignature(object = "HmmPredict")
: Graphical parameters.signature(.Object = "HmmPredict")
signature(object = "HmmPredict")
: Accessor
for the physical position of SNPs in the object HmmPredict
signature(object = "HmmPredict")
: Accessor
for the predictionssignature(object = "HmmPredict",
value="matrix")
: Replacement method for predictionssignature(object = "HmmPredict")
: Sample namessignature(object = "HmmPredict")
signature(object = "HmmPredict")
: Accessor for
hidden statesR. Scharpf
showClass("HmmPredict")