xmcmc {XDE} | R Documentation |
An object of class XdeMcmc is created by fitting the Bayesian
hierarchical model to the expressionSetList
example data.
data(xmcmc)
The xmcmc
data example was obtained as described in the
XDE vignette.
data(xmcmc) xmcmc ##ordinarily, one should not need to change the directory in an object ##of class XdeMcmc -- therefore, a replacment method is not defined pathToLogFiles <- system.file("logFiles", package="XDE") xmcmc@directory <- pathToLogFiles ##The $ operator can be used to extract chains. For instance, here we ##extract the c2 chain c2 <- xmcmc$c2 if(require(coda)){ plot(as.mcmc(c2)) }