xde {XDE} | R Documentation |
Fits the Bayesian hierarchical model for cross-study differential gene expression.
xde(paramsMcmc, esetList, outputMcmc)
paramsMcmc |
Object of class XdeParameter |
esetList |
Object of class ExpressionSetList |
outputMcmc |
Object of class XdeMcmc (optional) |
Details for fitting the Bayesian model are discussed elsewhere (see citation below and XdeParameterClass vignette)
Object of class XdeMcmc
See the vignettes for XdeParameterClass and XDE.
R. Scharpf
R. Scharpf et al., A Bayesian Model for Cross-Study Differential Gene Expression, Technical Report 158, Johns Hopkins University, Department of Biostatistics, 2007
XdeMcmc-class
, XdeParameter-class
, ExpressionSetList-class
## Not run: data(expressionSetList) xparam <- new("XdeParameter", phenotypeLabel="adenoVsquamous", esetList=expressionSetList) iterations(xparam) <- 10 fit <- xde(xparam, esetList=expressionSetList) ## End(Not run)