xde {XDE}R Documentation

Fit the Bayesian hierarchical model for cross-study differential gene expression

Description

Fits the Bayesian hierarchical model for cross-study differential gene expression.

Usage

  
  xde(paramsMcmc, esetList, outputMcmc)

Arguments

paramsMcmc Object of class XdeParameter
esetList Object of class ExpressionSetList
outputMcmc Object of class XdeMcmc (optional)

Details

Details for fitting the Bayesian model are discussed elsewhere (see citation below and XdeParameterClass vignette)

Value

Object of class XdeMcmc

Note

See the vignettes for XdeParameterClass and XDE.

Author(s)

R. Scharpf

References

R. Scharpf et al., A Bayesian Model for Cross-Study Differential Gene Expression, Technical Report 158, Johns Hopkins University, Department of Biostatistics, 2007

See Also

XdeMcmc-class, XdeParameter-class, ExpressionSetList-class

Examples

## Not run: 
  data(expressionSetList)
  xparam <- new("XdeParameter", phenotypeLabel="adenoVsquamous", esetList=expressionSetList)
  iterations(xparam) <- 10
  fit <- xde(xparam, esetList=expressionSetList)
## End(Not run)

[Package XDE version 1.2.0 Index]