ExpressionSetList-class {XDE} | R Documentation |
Each element in the list must be a valid
ExpressionSet
. The featureNames
must be identical for
each ExpressionSet
.
Objects can be created by calls of the form new("ExpressionSetList", ...)
.
.Data
:"list"
Class "list"
, from data part.
Class "vector"
, by class "list", distance 2.
Class class.AssayData
, by class "list", distance 2.
signature(object =
"ExpressionSetList")
Experimental function for filtering an arbitrary
list of ExpressionSets by integrative correlation. Genes are excluded
that do not exceed the fdr threshold in at least 1 of the studies.signature(x = "ExpressionSetList")
Subsets each
ExpressionSet
element in the list.signature(from = "list", to = "ExpressionSetList")
Coerces a list of ExpressionSet
objects to an object of class
ExpressionSetList
. The validityMethod
for the
ExpressionSetList
class will return an error if the
featureNames
for each ExpressionSet
are not identical.signature(object = "ExpressionSetList")
Accessor for the featureNames
signature(object = "ExpressionSetList")
See
geneCenter
signature(object="ExpresssionSetList")
Coerces
instance of ExpressionSetList to a list and does lapply on the list.
Returns an object of class ExpressionSetListsignature(x = "ExpressionSetList")
Numerical
vector giving the number of samples in each ExpressionSet
signature(x = "ExpressionSetList")
Numerical: number
of features or genessignature(object = "ExpressionSetList")
returns a
list of data.frames
. The elements of the list correspond to
the studies in the ExpressionSetList
object.signature(object = "ExpressionSetList")
Runs
principal components to generate cross-study summary scores of
differential expression in multiple studies. Not meant to be called
directly. See xsScores
.signature(object = "ExpressionSetList")
See standardizeSamples
signature(object = "ExpressionSetList")
See studyCenter
signature(object="ExpressionSetList")
An lapply for
ExpressionSetList
instances. See xapply
.signature(object = "ExpressionSetList")
See `zeroNu
. R. Scharpf
XdeMcmc-class
, XdeParameter-class
showClass("ExpressionSetList") data(expressionSetList)