scaleRefTable {arrayQuality} | R Documentation |
This function helps you scale quality measures in order to compare them on the same plot. It is used on reference slides to create a look-up table, which will be used to scale other slides.
scaleRefTable(reference=NULL, organism=c("Mm", "Hs"))
organism |
A "character" string naming the organism genome printed on the array, either "Mm" or "Hs". By default, organism is set to "Mm". It is used to retrieve the corresponding reference tables. |
reference |
A matrix resulting from globalQuality, to be used as reference table to compare slides. If 'NULL', the default table corresponding to organism will be used. |
A matrix containing median and iqr for each quality measure for tested slides.
Agnes Paquet
gpQuality
, globalQuality
,
qualBoxplot