readGPR {arrayQuality} | R Documentation |
This component reads a GenePix file (.gpr) and returns columns used for quality control.
readGPR(fnames = NULL, path= ".", DEBUG=FALSE, skip = 0, sep ="\t", quote="\"", controlId="ID",...)
fnames |
A "character" string naming the input file. |
path |
a "character" string representing the data directory. By default this is set to the current working directory ("."). |
DEBUG |
If 'TRUE', debug statements are printed. |
skip |
Number of lines to skip in the gpr files. |
sep |
A "character" string defining the type of separation for the columns in the gpr files. |
quote |
A "character" string defining the type of quote in the gpr files. |
controlId |
Character string. Name of the column of the gpr file used to define controls. |
... |
additional arguments. |
A list of vectors containing information extracted from the GenePix file
Agnes Paquet
slideQuality
, gpQuality
, globalQuality
datadir <- system.file("gprQCData", package="arrayQuality") if (interactive()) gprData <- readGPR(fnames="9Mm137.gpr", path=datadir)