removeLowQualityProbes {beadarraySNP}R Documentation

Quality control of SnpSetIllumina objects

Description

Remove probes form a SnpSetIllumina object that show a low quality throughout the experiment

Usage

removeLowQualityProbes(object, cutoff = 0.25)

Arguments

object SnpSetIllumina object
cutoff numeric

Details

Probes that have a median value below cutoff * median value for the whole experiment are deleted from the object.

Value

SnpSetIllumina object

Author(s)

Jan Oosting


[Package beadarraySNP version 1.8.0 Index]