segmentate {beadarraySNP}R Documentation

Segmentation for SnpSetIllumina objects

Description

Use snapCGH package to perform segmentation

Usage

segmentate(object, method = c("DNACopy", "HMM", "BioHMM", "GLAD"), normalizedTo = 2, doLog = TRUE, doMerge = FALSE, subsample = "OPA")

Arguments

object class SnpSetIllumina
method char, type of segmentation
normalizedTo numeric
doLog logical, perform transformation before segmentation, see convert2seglist
doMerge logical, perform merging of close states
subsample factor

Value

SnpSetIllumina object with elements observed, states and predicted set in the AssayData slot

Author(s)

Jan Oosting


[Package beadarraySNP version 1.8.0 Index]