plotGoldenGate4OPA {beadarraySNP} | R Documentation |
Plots a full genome view based on 4 subsamples of Illumina Golden Gate data
plotGoldenGate4OPA(object, cn.sum = NULL, sample = 1, plotRaw = FALSE, main = NULL, interact = FALSE, ...) plotGenomePanels(object, cn.sum = NULL, sample = 1, plotRaw = FALSE, main = NULL, interact = FALSE, panels = list(p1 = c(1, 2, 3, 22), p2 = c(5, 6, 7, 8, 9), p3 = c(10, 11, 12, 13, 14, 15, 21), p4 = c(4, 16, 17, 18, 19, 20, 98, 99)), ...)
object |
class SnpSetIllumina |
cn.sum |
list containing genomic states, see createCNSummary |
sample |
identifier to select the sample within the object |
plotRaw |
logical, plot raw data points |
main |
character, Title of plot |
interact |
logical, plot should be usable for interactive copy number determination interactiveCNselect |
panels |
list, vectors of chromosomes for each panel |
... |
extra arguments are formwarded to plot |
prepare interactive selection
list, see createCNSummary
Jan Oosting
segmentate, alterCN, interactiveCNselect createCNSummary