calculateQCarray {beadarraySNP} | R Documentation |
Retrieves QC and identifying information of Illumina Sentrix arrays.
calculateQCarray(object, QCobject = NULL, arrayType="Sentrix96")
object |
SnpSetIllumina object. Should contain information
of a single Sentrix array and a single type of OPA panel |
QCobject |
QCIllumina-class object: If set the information in the object
is amended with data from the SnpSetIllumina object |
arrayType |
character, see arrayType |
Sample summary values are mapped to the physical layout of the
Sentrix array using the Row
and Col
columns of the phenoData
slot. These will be available when read.SnpSetIllumina
is used
to create SnpSetIllumina
objects.
Use successive calls to calculateQCarray
to process Sentrix arrays
with multiple probe panels.
A QCIllumina
object
Jan Oosting
code{link{QCIllumina-class}}, code{link{reportSamplePanelQC}}, code{link{plotQC}}
## Not run: QC<-calculateQCarray(data.raw1) ## Not run: QC<-calculateQCarray(data.raw2,QC)