interactiveCNselect {beadarraySNP} | R Documentation |
This function plots the genomic view of a sample, and allows the assignment of a discrete copy number to each segment
interactiveCNselect(object, sample = 1, dnaIndex)
object |
class SnpSetIllumina after segmentation |
sample |
Sample identifier within object |
dnaIndex |
numeric, measured DNA index of the sample (1=normal) |
The user can interactively assign discrete, integer copy number values to each segment. This is done by either clicking in the lower part of a panel to decrease the copy number, or in the higher part of a panel to increase the copy number. The order of copy number values is always maintained; a segment with a lower raw value can not get a higher copy number assigned then a segment with a higher raw copy number value.
list, see createCNSummary
Jan Oosting
segmentate, alterCN, plotGoldenGate4OPA createCNSummary