BeadLevelList-class {beadarray} | R Documentation |
A class for storing red and green channel foreground and background intensities from an Illumina experiment.
Objects can be created by calls of the form new("BeadLevelList")
, but are usually created by readIllumina
.
Objects of this class contain the following slots
beadData : | an environment for storing the raw bead-level data. Each row correspond to a bead and columns the data. |
phenoData : | an 'AnnotatedDataFrame' containing experimental information. |
arrayInfo : | a list containing array information. |
annotation : | character storing annotation package information. |
signature(.Object = "BeadLevelList")
dim(object)
The dimension of the
BeadLevelList
objectcopyBeadLevelList(object)
BeadLevelList
objectarrayNames(object,arrays=NULL)
BeadLevelList
object for selected arrays
combineBeadLevelLists(object1,object2)
BeadLevelList
objects into onegetArrayData(object,what="G",log=TRUE)
what
intensities on the log
scale from the
BeadLevelList
numBeads(object,arrays=NULL)
arrays
pData(object)
phenoData(object)
Mark Dunning and Matt Ritchie