Categorized views of R package repositories


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Documentation for package ‘biocViews’ version 1.10.6

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biocViews-package Categorized views of R package repositories
BiocView-class Class "BiocView"
biocViews Categorized views of R package repositories
biocViewsVocab Bioconductor Task Views Vocabulary Data
bvPackageTable-class Class "BiocView"
bvParentViews-class Class "BiocView"
bvSubViews-class Class "BiocView"
bvTitle-class Class "BiocView"
coerce,BiocView,rdPackageTable-method Class "BiocView"
extractManuals Extract Rd man pages and build pdf reference manuals from local package repository
extractVignettes Extract pdf vignettes from local package repository
genReposControlFiles Generate CRAN-style repository control files
getBiocSubViews Build a list of BiocView objects from a package repository
getBiocViews Build a list of BiocView objects from a package repository
getPacksAndViews Parse VIEWS file for views and packages
getSubTerms Retrieve a term and its children from a vocab DAG
htmlDoc Create a complete HTML document representation of an object
htmlDoc,BiocView-method Class "BiocView"
htmlDoc,Htmlized-method Class "Htmlized"
htmlDoc,PackageDetail-method Class "PackageDetail"
htmlDoc,RepositoryDetail-method Class "RepositoryDetail"
htmlFilename Return a filename for an object's HTML representation
htmlFilename,BiocView-method Class "BiocView"
htmlFilename,character-method Return a filename for an object's HTML representation
htmlFilename,PackageDetail-method Class "PackageDetail"
htmlFilename,RepositoryDetail-method Class "RepositoryDetail"
Htmlized-class Class "Htmlized"
htmlValue HTML Representation of an Object
htmlValue,BiocView-method Class "BiocView"
htmlValue,bvParentViews-method Class "BiocView"
htmlValue,bvSubViews-method Class "BiocView"
htmlValue,PackageDetail-method Class "PackageDetail"
htmlValue,pdAuthorMaintainerInfo-method Class "PackageDetail"
htmlValue,pdDescriptionInfo-method Class "PackageDetail"
htmlValue,pdDetailsInfo-method Class "PackageDetail"
htmlValue,pdDownloadInfo-method Class "PackageDetail"
htmlValue,pdVignetteInfo-method Class "PackageDetail"
htmlValue,pdVigsAndDownloads-method Class "PackageDetail"
htmlValue,rdPackageTable-method Class "RepositoryDetail"
htmlValue,RepositoryDetail-method Class "RepositoryDetail"
makeVocInfo Parse VIEWS file for views and packages
PackageDetail-class Class "PackageDetail"
pdAuthorMaintainerInfo-class Class "PackageDetail"
pdDescriptionInfo-class Class "PackageDetail"
pdDetailsInfo-class Class "PackageDetail"
pdDownloadInfo-class Class "PackageDetail"
pdVignetteInfo-class Class "PackageDetail"
pdVigsAndDownloads-class Class "PackageDetail"
permulist Parse VIEWS file for views and packages
pump Parse VIEWS file for views and packages
rdPackageTable-class Class "RepositoryDetail"
RepositoryDetail-class Class "RepositoryDetail"
show,BiocView-method Class "BiocView"
tellSubTop Parse VIEWS file for views and packages
tellSuperTop Parse VIEWS file for views and packages
writeBiocViews Write a list of BiocView objects to HTML
writeHtmlDoc Write an XML DOM containing HTML to a file
writePackageDetailHtml Write HTML files for packages in a CRAN-style repository
writeRepositoryHtml Write package descriptions and a repository index as HTML
writeTopLevelView Write the view for the root of a vocabulary to disk
write_REPOSITORY Write a REPOSITORY control file for a CRAN-style package repository
write_SYMBOLS Write a SYMBOLS file
write_VIEWS Write a VIEWS control file for a CRAN-style package repository