Find chromosome regions showing common gains/losses


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Documentation for package ‘cghMCR’ version 1.12.0

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cghMCR The constructor for the cghMCR class
cghMCR-class Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
getSegments Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
getSegments,marrayNorm-method Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
getSegments,marrayRaw-method Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
MCR Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
MCR,cghMCR-method Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
mergeMCRProbes A function that appends probe ids to a data frame containing MCRs
plot.DNAcopy A function to plot the original data along with the segments identified using segment of DNAcopy.
sampleData The constructor for the cghMCR class