arrayNew | Create a new x11 device |
arraySize | Determine the size of the array |
as.matrix.Codelink | Return a matrix of intensity values |
bkgdCorrect | Background correction of intensity values. |
Codelink-class | Class Codelink |
codelink.example | Dataset of class 'Codelink' |
codelink.exprset | Dataset of class 'CodelinkSet' |
createWeights | Create weight for Codelink chips |
cutCV | Calculate cutoff based in CV. |
decDetect | Determine decimal type of Codelink files |
dim.Codelink | Return the dimension of a Codelink object. |
fc2Cond | Select probes based on fold change calculation |
imageCodelink | Image plot of Codelink arrays |
logCodelink | Application of logCodelink to Codelink object |
mergeArray | Merge Codelink Bioarrays Data |
na2false | Set NAs to FALSE |
normalize | Normalization wrapper for Codelink objects. |
normalize.loess | Normalized chips using cyclic loess. |
plotCorrelation | Plot correlation scatterplot between two arrays |
plotCV | Plot of CV |
plotDensities | Plot Densities |
plotDensities,Codelink-method | Plot Densities |
plotMA | MA plot |
printHead | Print briefly a Codelink object |
readCodelink | Read Codelink Bioarrays Data |
readHeader | Read Header from Codelink Bioarrays Files |
readHeaderXLS | Read Header from XLS exported Codelink Bioarrays Files |
reportCodelink | Write a report of genes selected in HTML |
selCV | Select based on CV cutoff. |
show,Codelink-method | Class Codelink |
SNR | Calculate SNR |
writeCodelink | Write a Codelink object to file. |
writeCodelink,CodelinkSet-method | Write a Codelink object to file. |
[,Codelink-method | Class Codelink |