readCodelink {codelink} | R Documentation |
Read data exported as text by Codelink Software. It reads values (normalized by Codelink Software or not) flags and information about probes.
readCodelink(files=list.files(pattern="TXT"), sample.name=NULL, flag, dec=NULL, type="Spot", preserve=FALSE, verbose=2, file.type="Codelink", check=TRUE, fix=FALSE)
files |
list of files to read. |
sample.name |
vector of same length as files with sample names. |
flag |
list with values to assign based on Flag quality values. |
dec |
character indicating the decimal character used in the files. |
type |
character indicating which base value to read from files. |
preserve |
logical, if TRUE Bkgd_stdev slot is not removed (if present). |
verbose |
numerical, set the level of information. Level 2 set as old behaviour. Level > 2 output some debug info. |
file.type |
exported file type, currently Codelink or XLS file formats supported. |
check |
logical, check for probe order consistency. |
fix |
logical, try to fix probe order consistency. |
An object of class "Codelink".
Diego Diez
## Not run: # reading default extension (TXT). data <- readCodelink() # specify a different one. files <- list.files(pattern = "txt") data <- readCodelink(files = files) # example. data(codelink.example) ## End(Not run)