makeSubMotifCon {cosmo} | R Documentation |
This function constructs a texttt{subMotifCon} object representing a constraint on the unknown position weight matrix that requires the motif to contain a given submotif
makeSubMotifCon(submotif, minfreq)
submotif |
character the submotif |
minfreq |
numeric roughly, the minimum frequency with which
nucleotides in the submotif must occur in the motif |
An object of class texttt{subMotifCon}.
Fabian Gallusser, fgallusser@berkeley.edu
boundCon
, shapeCon
, subMotifCon
, posFreqCon
, shapeDiffCon
, palCon
pfc <- makeSubMotifCon("CGC", 0.8)