writeConFile {cosmo}R Documentation

Converts an object of class 'constraintSet' into a text file

Description

This function converts an object of class constraintSet or a list of such objects into a text file.

Usage

  writeConFile(constraints, stringOutput=TRUE, outputFile="constraints.txt")

Arguments

constraints object of class constraintSet or list of objects of class constraintSet which is to be converted in a text format
stringOutput logical, whether the constraint should be written as a string. If FALSE, the constraint is written as a text file
outputFile path and name of the constraint text file to be created

Details

Both the string and the text file can be used to submit constraints directly to the COSMO web application, which is an alternative to the GUI application. The text file has the advantage of being more easy to read and to load for future use.

Value

NULL A single text file is created, by default in the working directory.

Author(s)

Fabian Gallusser, fgallusser@berkeley.edu

See Also

constraintSet, readConFile

Examples

set <- makeConSet(4,c("B","P","V","B"),c(4,50,NA,4))
con1 <- makeBoundCon(1,2)
con2 <- makePalCon(1,4,0.5)
con3 <- makeSubMotifCon("TATA",0.6)
con4 <- makePosFreqCon("2","A",0.5)
con5 <- makePosFreqCon("All","G",0.4)
conSet <- addCon(set,list(con1,con2,con3,con4,con5),c(2,NA,NA,1,3))
conString <- writeConFile(conSet)

[Package cosmo version 1.8.0 Index]