compSummary {goProfiles}R Documentation

This function returns a brief summary of the comparison between two (expanded) profiles.

Description

Function to return a brief summary of the comparison between two (expanded) profiles.

Usage

compSummary(l, decs = 6)

Arguments

l A list of comparison results as returned by a call to texttt{compareGenelists}
decs Number of decimal places to use in the output

Value

A data frame with the summarized results of each comparison. The values contained are: texttt{Sqr.Eucl.Dist}: The squared euclidean distance, texttt{Standard Err}: The standard error estimate, texttt{pValue} p value of the test, texttt{low conf.int}Lower value for the desired confidence interval, texttt{up conf.int}Upper value for the desired condfidence interval.

Author(s)

Alex Sanchez

Examples

data(sampleProfiles)
comparedMF <-compareGOProfiles (pn=expandedWelsh01[['MF']], 
                          qm  = expandedSingh01[['MF']], 
                          pqn0= commonExpandedWelsh01Singh01[['MF']])
print(comparedMF)
print(compSummary(comparedMF))

[Package goProfiles version 1.4.0 Index]