compSummary {goProfiles} | R Documentation |
Function to return a brief summary of the comparison between two (expanded) profiles.
compSummary(l, decs = 6)
l |
A list of comparison results as returned by a call to texttt{compareGenelists} |
decs |
Number of decimal places to use in the output |
A data frame with the summarized results of each comparison. The values contained are: texttt{Sqr.Eucl.Dist}: The squared euclidean distance, texttt{Standard Err}: The standard error estimate, texttt{pValue} p value of the test, texttt{low conf.int}Lower value for the desired confidence interval, texttt{up conf.int}Upper value for the desired condfidence interval.
Alex Sanchez
data(sampleProfiles) comparedMF <-compareGOProfiles (pn=expandedWelsh01[['MF']], qm = expandedSingh01[['MF']], pqn0= commonExpandedWelsh01Singh01[['MF']]) print(comparedMF) print(compSummary(comparedMF))