goProfiles-package |
Performs Gene Ontology based analysis using Functional Profiles. |
as.GOTerms.frame |
Functions to transformconvert objects between different types |
as.GOTerms.list |
Functions to transformconvert objects between different types |
basicCD4 |
Sample Profiles computed on some datasets in the package |
basicHugo |
Sample Profiles computed on some datasets in the package |
basicProfile |
Builds basic functional profile |
basicSingh01 |
Sample Profiles computed on some datasets in the package |
basicWelsh01 |
Sample Profiles computed on some datasets in the package |
BioCpack2EntrezIDS |
Functions to transformconvert objects between different types |
BioCpack2Profiles |
Functions to transformconvert objects between different types |
BioCprobes2Entrez |
Functions to transformconvert objects between different types |
CD4GOTermsFrame |
Entrez identifiers for CD4-TCells example |
CD4GOTermsList |
Entrez identifiers for CD4-TCells example |
CD4LLids |
Entrez identifiers for CD4-TCells example |
commonExpandedWelsh01Singh01 |
Sample Profiles computed on some datasets in the package |
compareGeneLists |
Compares two lists of genes by building (expanded) profiles and comparing them |
compareGOProfiles |
Comparison of lists of genes through their functional profiles |
compareProfilesLists |
Compares two of expanded profiles |
compSummary |
This function returns a brief summary of the comparison between two (expanded) profiles. |
diseaseIds |
Entrez identifiers for disease-related genes in the OMIM database |
dominantIds |
Entrez identifiers for disease-related genes in the OMIM database |
dominantIdsEBI |
Entrez identifiers for disease-related genes in the OMIM database |
dominantIdsNCBI |
Entrez identifiers for disease-related genes in the OMIM database |
drosophilaIds |
Entrez identifiers for genes related with an eye mutation in drosophila |
equivalentGOProfiles |
Are two lists of genes equivalent in terms of their Gene Ontology profiles? |
equivSummary |
This function returns a brief summary of the equivalence test between two profiles. |
expandedCD4 |
Sample Profiles computed on some datasets in the package |
expandedHugo |
Sample Profiles computed on some datasets in the package |
expandedLevel |
Function to create expanded levels which can contain GO Terms at different GO levels |
expandedProfile |
Builds expanded profiles |
expandedSingh01 |
Sample Profiles computed on some datasets in the package |
expandedWelsh01 |
Sample Profiles computed on some datasets in the package |
expandTerm |
Function to create expanded levels which can contain GO Terms at different GO levels |
fitGOProfile |
Does a "sample" GO profile 'pn', observed in a sample of 'n' genes, fit a "population" or "model" p0? |
getAncestorsLst |
Functions to create and manage lists of GO terms associated with a vector of 'Entrez' identifiers |
getGOLevel |
Functions to create and manage lists of GO terms associated with a vector of 'Entrez' identifiers |
goProfiles |
Performs Gene Ontology based analysis using Functional Profiles. |
GOTermsFrame2GOTermsList |
Functions to transformconvert objects between different types |
GOTermsList |
Functions to create and manage lists of GO terms associated with a vector of 'Entrez' identifiers |
hugoIds |
Entrez Identifiers obtained from the Human Genome Organization |
mergeProfilesLists |
Combines two lists of profiles into one |
michaudIds |
Entrez identifiers for genes related with an eye mutation in drosophila |
morbidmapIds |
Entrez identifiers for disease-related genes in the OMIM database |
omimIds |
Entrez identifiers for disease-related genes in the OMIM database |
ostrinIds |
Entrez identifiers for genes related with an eye mutation in drosophila |
plotProfiles |
Plot functional profiles |
printProfiles |
Print functional profiles |
prostateIds |
Prostate cancer-related genes |
recessiveIds |
Entrez identifiers for disease-related genes in the OMIM database |
recessiveIdsEBI |
Entrez identifiers for disease-related genes in the OMIM database |
recessiveIdsNCBI |
Entrez identifiers for disease-related genes in the OMIM database |
sampleProfiles |
Sample Profiles computed on some datasets in the package |
singh01EntrezIDs |
Prostate cancer-related genes |
singh05EntrezIDs |
Prostate cancer-related genes |
welsh01EntrezIDs |
Prostate cancer-related genes |
welsh05EntrezIDs |
Prostate cancer-related genes |