plotStringencyGene {lumi}R Documentation

plot the Stringency related control probe profiles

Description

Plot the Stringency related control probe (Low-Stringency, Medium-Stringency and High-Stringency) profiles. Using getControlType function to view available stringency types.

Usage

plotStringencyGene(controlData, lib = NULL, slideIndex = NULL, addLegend = TRUE, logMode = TRUE, ...)

Arguments

controlData a LumiBatch object including control data or a control data data.frame
lib the annotation library (for retrieving the gene name)
slideIndex the slide index or ID corresponding to each sample
addLegend whether add legend or not
logMode whether show the data in log2 scale
... other parameters used by default matplot function

Value

plot the picture and return TRUE if everything is OK

Author(s)

Pan Du

See Also

addControlData2lumi, plotControlData

Examples

        controlFile <- system.file('doc', 'Control_Probe_Profile.txt', package='lumi')
        controlData <- getControlData(controlFile)
        plotStringencyGene(controlData)

[Package lumi version 1.8.3 Index]