produceGEOSampleInfoTemplate {lumi} | R Documentation |
Produce the template of GEO sample information, which is used for function produceGEOSubmissionFile
.
produceGEOSampleInfoTemplate(lumiNormalized, lib.mapping = NULL, fileName = "GEOsampleInfo.txt")
lumiNormalized |
The normalized data (LumiBatch object) |
lib.mapping |
The Illumina ID Mapping library, e.g., "lumiHumanIDMapping" |
fileName |
The file name of Tab separated sample information file |
This function just produces a template of sample information with some default fillings. Users need to fill in the detailed sample descriptions, especially the Sample_title, Sample_description and some protocols. No blank fields are allowed. Function produceGEOSubmissionFile
will produce the file GEO submission file based on this sample information. The users should not use "#" in the description as it is a reserved character.
Save the result as a Tab separated text file or return a data.frame if the fileName is NULL.
Pan Du
http://www.ncbi.nlm.nih.gov/projects/geo/info/soft2.html