plotControlData {lumi} | R Documentation |
Plot the mean expression (with standard deviation bar) of different type of control probes. Multiple control types can be plotted in a single plot. The available control types can be get by running getControlType(controlData).
plotControlData(controlData, type = NULL, slideIndex = NULL, logMode = FALSE, new = TRUE, ...)
controlData |
a LumiBatch object including control data or a control data data.frame |
type |
the control probe type (case insensitive), which can be get by running getControlType(controlData) |
slideIndex |
the slide index or ID corresponding to each sample |
logMode |
whether show the data in log2 scale |
new |
whether refresh the new plot or add it on the old one |
... |
other parameters used by default plot function |
When multiple control types are selected, they will be plotted in a two-column plot.
plot the picture and return TRUE if everything is OK
Pan Du
controlFile <- system.file('doc', 'Control_Probe_Profile.txt', package='lumi') controlData <- getControlData(controlFile) getControlType(controlData) plotControlData(controlData, type='NEGATIVE')