activeModScoreHTML {maigesPack} | R Documentation |
This function takes an object of class maigesActMod
,
that is generated using the function activeMod
to do
functional classification of gene groups, and save an HTML file with
global score for genes separated by gene groups (modules).
activeModScoreHTML(mod=NULL, dir="./", fileSave="scores")
mod |
object of class maigesActMod , resulted from
functional classification of gene groups. |
dir |
character string giving the folder to save the file. |
fileSave |
string giving the file name. You don't need to put the extension 'html', it will be put automatically. |
This function generates an HTML file and don't return any R value or object.
Gustavo H. Esteves <gesteves@vision.ime.usp.br>
## Loading a little dataset data(gastro) ## Doing functional classification of gene groups for 'Tissue' sample label gastro.mod = activeMod(gastro.summ, sLabelID="Tissue", cutExp=1, cutPhiper=0.05) activeModScoreHTML(gastro.mod)