maigesDEcluster-class {maigesPack} | R Documentation |
This class extends the class maigesDE
to store results
from differential expression analysis. It is produced in the same way
as the latter, but has one more slot containing the W values. This is
useful to do cluster analysis. Together the slots of the
maigesDE
class, it has one more given in Slots section.
Objects of this class are produced in the same way as
maigesDE
. The addition of the slot W
turn
possible to do cluster analysis in this class of objects using the
functions hierMde
, somMde
and
kmeansMde
, selecting genes according to the results of gene
expression analysis.
W
:signature(x = 'maigesDEcluster')
: boxplot method for
maigesDEcluster
class. Display boxplots of one gene
previously defined.signature(x = 'maigesDEcluster')
: plot method for
maigesDEcluster
class. Display MA plots.signature(x = 'maigesDEcluster')
: print method for
maigesDEcluster
class.signature(x = 'maigesDEcluster')
: show method for
maigesDEcluster
class.signature(x = 'maigesDEcluster')
: summary method for
maigesDEcluster
class.Gustavo H. Esteves <gesteves@vision.ime.usp.br>
deGenes2by2Ttest
, deGenes2by2Wilcox
,
deGenes2by2BootT
, deGenesANOVA
,
hierMde
, somMde
, kmeansMde
.