maigesRelNetB-class {maigesPack} | R Documentation |
This class defines a structure to store the results of relevance network analysis,
using a method that was proposed by Butte et al. (2000), see the
reference below. Objects of this type are generated calling
the function relNetworkB
.
Objects of this class are produced by calling the function
relNetworkB
over an object of class maiges
to search for pairs of genes with significant correlation values in a
specific sample type, according to the method proposed by Butte et
al. (2000).
W
:Corr
:Pval
:maxB
:types
:Slabel
:Date
:V.info
:signature(x = 'maigesRelNetB')
: image method for
maigesRelNetB
class. Display colour representation of
the correlation matrix.signature(x = 'maigesRelNetB')
: plot method for
maigesRelNetB
class. Display a circular graph
representing the relevance network.signature(x = 'maigesRelNetB')
: print method for
maigesRelNetB
class.signature(x = 'maigesRelNetB')
: show method for
maigesRelNetB
class.signature(x = 'maigesRelNetB')
: summary method for
maigesRelNetB
class.Gustavo H. Esteves <gesteves@vision.ime.usp.br>
Butte, A.J.; Tamayo, P.; Slonim, D.; Golub, T.R. and Kohane, I.S. Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks. PNAS, 97, 12182-12186, 2000. (http://www.pnas.org/cgi/content/full/97/22/12182)