syn.net {minet} | R Documentation |
This is the true underlying network used to generate the dataset loaded
by data(syn.data)
- see syn.data
.
data(syn.net)
syn.net
is a boolean adjacency matrix representing an undirected graph of 50 nodes.
syn.net
is the "yeast_nn.sif" source network from the SynTReN generator
where all the variables/nodes not in syn.data
were removed.
Tim Van den Bulcke, Koenraad Van Leemput, Bart Naudts, Piet van Remortel, Hongwu Ma, Alain Verschoren, Bart De Moor, and Kathleen Marchal. Syntren : a generator of synthetic gene expression dataset for design and analysis of structure learning algorithms. BMC Bioinformatics, 2006.
data(syn.data) data(syn.net) mim <- build.mim(discretize(syn.data),estimator="mi.empirical") infered.net <- mrnet(mim) max(fscores(validate( infered.net, syn.net )))