binInsert {occugene}R Documentation

Insert Locations

Description

Returns the number of ORF knockouts.

Usage

binInsert(insert,orf,returnCounts=FALSE,overlap=NULL,DEBUG=FALSE)

Arguments

insert List of insertion locations
orf 2-column matrix of annotation
returnCounts Return the number of insertions
overlap Number of shared targets
DEBUG Flag to debug the code

Details

Finds the number of ORFs that have an insertion given a list of locations. If the returnCounts flag is true, the function returns the number of insertions per ORF. Uses the function hist for gains in speed.

Value

Returns a numeric or an object

Author(s)

Oliver Will owill4@yahoo.com

References

See the book chapter O. Will (**) in **.

Examples

# **

[Package occugene version 1.2.0 Index]