occup2Negenes {occugene} | R Documentation |
Convert the annotation and insertion formation of the occupancy package into the format for the negenes package.
occup2Negenes(anno,clone,INTERGENIC=FALSE)
anno |
2-column matrix of annotation |
clone |
vector of insertion locations |
INTERGENIC |
Process the intergenic region as last ORF. |
Convert the annotation and insertion formation of the occupancy package into the format for the negenes package. Of the returned data frame, column 1 is n.sites, column 2, n.sites2, column 3, counts, column 4, counts2.
Returns a data frame
Oliver Will owill4@yahoo.com
See the book chapter O. Will (**) in **
data(sampleAnnotation) data(sampleInsertions) anno <- cbind(sampleAnnotation$first,sampleAnnotation$last) clone <- sampleInsertions$position occup2Negenes(anno,clone)