Functions for Multinomial Occupancy Distribution


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Documentation for package ‘occugene’ version 1.2.0

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binHist Histogram Breakpoints
binInsert Insert Locations
binInsertHist Insert Locations Quickly
checkFormat Checks the Format of Annotation and Insertions
delta0 Number of New Knockouts
eMult Expected Value of the Occupancy Distribution
etDelta Number of New ORF Knockouts
fCumul Parametric Function for the Cumulative Occupancy Distribution
fFit Parametric Fit for the Cumulative Occupancy Distribution
loadAnnotation Loads Annotation File
loadInsertions Load Genome Annotation File
occup2Negenes Convert Occupancy Format to Negenes
sampleAnnotation Annotation for a Hypothetical Prokayote
sampleInsertions Insertions for a Hypothetical Clonal Library
unbiasB0 Unbiased Estimator of the Number of Non-essential ORFs
unbiasDelta0 Unbiased Number of New Knockouts
varMult Variance of the Occupancy Distribution