SnpLevelSet-class {oligoClasses} | R Documentation |
Virtual class for SNP-level data
A virtual Class: No objects may be created from it.
assayData
:assayData
:
contains matrices with equal dimensions, and with column number
equal to nrow(phenoData)
. Class:class.AssayData
phenoData
:class.eSet
featureData
:class.eSet
experimentData
:class.eSet
annotation
:class.eSet
.__classVersion__
:"Versions"
Class eSet
, directly.
Class VersionedBiobase
, by class "eSet", distance 2.
Class Versioned
, by class "eSet", distance 3.
signature(object = "SnpLevelSet")
: Accessor for
matrix of genotype callssignature(object = "SnpLevelSet", value =
"matrix")
: Replacement method for genotype calls.signature(object = "SnpLevelSet")
:
Accessor for matrix of confidence scores for the genotype callssignature(object = "SnpLevelSet",
value = "matrix")
: Replacement methodsignature(object = "SnpLevelSet")
:
See also chromosome
signature(object = "SnpLevelSet", value =
"character")
: See also chromosome
signature(object = "SnpLevelSet")
:
Accessor for matrix of confidence scores for the copy number estimates.signature(object = "SnpLevelSet", value
= "matrix")
: Replacement method for confidence scores of copy number estimates.signature(x = "SnpLevelSet", y =
"SnpLevelSet")
: Useful for combining two objects with the same
phenoData
. For instance, combine an object created from the
Hind 50k chip and an object created from the Xba 50k chip.signature(object = "SnpLevelSet")
: Accessor
for matrix of copy numbers.signature(object = "SnpLevelSet", value =
"matrix")
: Replacement method for copy number matricessignature(object = "SnpLevelSet")
: See also db
signature(object = "SnpLevelSet")
: See also position
RS
showClass("SnpLevelSet")