SnpCallSet-class {oligo}R Documentation

"SnpSet" Extensions

Description

Class to store genotype calls / copy number estimates (and confidences) obtained via SNP arrays.

Objects from the Class

Objects can be created by calls of the form new("SnpCallSet", assayData, featureData, phenoData, experimentData, annotation, calls, callsConfidence, ...).

Slots

assayData:
Object of class "AssayData"
phenoData:
Object of class "AnnotatedDataFrame"
featureData:
Object of class "AnnotatedDataFrame"
experimentData:
Object of class "MIAME"
annotation:
Object of class "character"
.__classVersion__:
Object of class "Versions"

Extends

Class eSet, directly. Class VersionedBiobase, by class "eSet", distance 2. Class Versioned, by class "eSet", distance 3.

Methods

No methods defined with class "SnpCallSet" in the signature.

See Also

eSet, VersionedBiobase, link[Biobase:class.Versioned]{Versioned}

Examples

##---- Should be DIRECTLY executable !! ----

[Package oligo version 1.6.0 Index]