mapping2exon {oneChannelGUI} | R Documentation |
This function retrieve from RRE the PSR sequences associated to the exon-level probe sets and all exons associated to the gene associated to PRS. Subsequently identify the exon where PSR maps and procuces a fasta file were are located exon-level PSR and target exon. The mapping is done using the countPattern function of the Biostrings package. Up to three mismathces are allowed in PSR mapping on exonic sequence.
mapping2exon()
Raffaele A Calogero