Probe level Locally moderated Weighted t-tests.


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Documentation for package ‘plw’ version 1.2.0

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plw-package plw
AffySpikeU95Subset Spike-in data
estimateMVbeta Zero mean multivariate t-dist. with covariate dependent scale.
estimateSigma Fit zero mean multivariate t-distribution, known df
estimateSigmaMV Fit zero mean multivariate t-distribution
estimateSigmaMVbeta Zero mean multivariate t-dist. with covariate dependent scale.
getKnots Spline-knots for plw and lmw
HGU95subset1016 Spike-in data
HowToPLW View HowToPLW
lmw Locally Moderated Weighted-t.
logitTStat logit-t and t-test by row
logitTTransform logit-t and t-test by row
madByIndex Computes statistics by index or by row
meanByIndex Computes statistics by index or by row
meanSdByRow Computes statistics by index or by row
medianByIndex Computes statistics by index or by row
orderStatByIndex Computes statistics by index or by row
plotSummaryLog2FC Return or plots analysis result for top ranking or selected probe sets
plotSummaryT Return or plots analysis result for top ranking or selected probe sets
plw Probe level Locally moderated Weighted median-t.
scaleParameterPlot Scale parameter plotted against mean intensity
sdByIndex Computes statistics by index or by row
spikedProbesU95 Spike-in data
studenttTTest logit-t and t-test by row
topRankSummary Return or plots analysis result for top ranking or selected probe sets
varHistPlot Variance histogram and density