plotWhiskers {puma} | R Documentation |
A plot showing error bars for genes of interest.
plotWhiskers( eset , comparisons=c(1,2) , sortMethod = c("logRatio", "PPLR") , numGenes=50 , xlim , main = "PUMA Whiskers plot" , highlightedGenes=NULL )
eset |
An object of class ExpressionSet . |
comparisons |
A 2-element integer vector specifying the columns of data to be compared. |
sortMethod |
The method used to sort the genes. "logRatio" is fold change. PPLR is Probability of Positive Log Ratio (as determined by the pumaDE method). |
numGenes |
Integer. Number of probesets to plot. |
xlim |
The x limits of the plot. See plot.default . |
main |
A main title for the plot. See plot.default . |
highlightedGenes |
Row numbers of probesets to highlight with an asterisk. |
This function has no return value. The output is the plot created.
Richard D. Pearson
Related method pumaDE