plotChromosome {quantsmooth} | R Documentation |
This function is a wrapper for plotSmoothed, to make data subsetting easier
plotChromosome(gendata, chrompos, chromosome, dataselection = NULL, ylim = NULL, normalized.to = NULL, grid = NULL, smooth.lambda = 2, interval = 0.5, ...)
gendata |
numeric matrix or data.frame |
chrompos |
chrompos object with same numer of rows as gendata |
chromosome |
numeric, chromosme to show |
dataselection |
optional, subset of samples/columns in gendata |
ylim |
limits for plot |
normalized.to |
y-value(s) for line |
grid |
x-value(s) for line |
smooth.lambda |
smoothing parameter, see quantsmooth |
interval |
position of extra lines besides median, see plotSmoothed |
... |
extra arguments for plotSmoothed |
The function is used for its side effects
Jan Oosting