estimerrors |
computes the standard deviation of the measurement error using pre-calculated tables specific to the plattform or user-defined table |
fitgene |
Fits the optimal kinetic parameter values for a particular gene. |
fiveGyMAS5 |
Example data for the rHVDM package (time course of irradiated human T cells) |
genestoscreen |
Genes differentially expressed |
HVDMcheck |
Checks that an object of class ExpressionSet is compliant with HVDM |
HVDMreport |
generates an HTML report using the input |
leastnoisychips |
Identifiers of the three least noisy arrays in the p53 experiment |
p53traingenes |
Known p53 targets |
rHVDMplattforms |
plattform-specific repository allowing to estimate measurement errors |
screening |
Fits the optimal kinetic parameter values for several genes. |
training |
Performs the HVDM training step and returns a list containing the results |