"addParameter-methods" |
Add a column data variable to the data of a FCS object |
"addParameter-methods",FCS,vector-method |
Class "FCS" : Flow Cytometry Standard |
"checkvars-methods" |
Checks the ranges, dimensions, and names of the metadata based on the current data of an FCS R-object. |
"checkvars-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
"coerce-methods" |
Coercing an object class to another class |
"coerce-methods",data.frame,FCS-method |
Class "FCS" : Flow Cytometry Standard |
"coerce-methods",FCS,data.frame-method |
Class "FCS" : Flow Cytometry Standard |
"coerce-methods",FCS,matrix-method |
Class "FCS" : Flow Cytometry Standard |
"coerce-methods",matrix,FCS-method |
Class "FCS" : Flow Cytometry Standard |
"dim.FCS-methods" |
Obtaining the dimensions of the data of an "FCS-class" object |
"dim.FCS-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
"equals-methods" |
Checks equality of two "FCS-class" objects |
"equals-methods",FCS,FCS-method |
Class "FCS" : Flow Cytometry Standard |
"FCS" |
Class "FCS" : Flow Cytometry Standard |
"FCS-class" |
Class "FCS" : Flow Cytometry Standard |
"FCSgate" |
Class "FCSgate" Flow Cytometry Standard extension to gating |
"FCSgate-class" |
Class "FCSgate" Flow Cytometry Standard extension to gating |
"FCSggobi" |
Class "FCSggobi" : Dynamic Plots |
"FCSggobi-class" |
Class "FCSggobi" : Dynamic Plots |
"FCSmetadata" |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
"FCSmetadata-class" |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
"FCSsummary-class" |
Class "FCSsummary" Summary object for a "FCS-class" |
"fixvars-methods" |
Checks and fixes the ranges, dimensions, and names of the metadata based on the current data of an FCS R-object. |
"fixvars-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
"fluors-methods" |
Obtaining the Data of Fluorescence Measurements from a FCS object |
"fluors-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
"ggobi-methods" |
Dynamic Plotting and Viewing the "FCS" object data high-dimensionally |
"ggobi-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
"metaData-methods" |
Extraction of the FCSmetadata-class object from a FCS-class object |
"metaData-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
"plot-methods" |
Graphical representation of an object |
"plot-methods",FCS,missing-method |
Class "FCS" : Flow Cytometry Standard |
"print-methods" |
Printing an object |
"print-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
"print-methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
"print-methods",FCSsummary-method |
Class "FCSsummary" Summary object for a "FCS-class" |
"show-methods" |
Showing an object |
"show-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
"show-methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
"show-methods",FCSsummary-method |
Class "FCSsummary" Summary object for a "FCS-class" |
"summary-methods" |
Summary of object |
"summary-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
"summary-methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
"[" |
Extraction of slot information using "[" |
"[",ANY-method |
Extraction of slot information using "[" |
"[",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
"[",genericFunction-method |
Extraction of slot information using "[" |
"["-methods |
Extraction of slot information using "[" |
"[-methods" |
Extraction of slot information using "[" |
"[-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
"[-methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
"[<-" |
Replacement and/or Addition of new slot or indexed elements using "[<-" |
"[<-",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
"[<-"-methods |
Replacement and/or Addition of new slot or indexed elements using "[<-" |
"[<--methods" |
Replacement and/or Addition of new slot or indexed elements using "[<-" |
"[<--methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
"[<--methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
"[[" |
Extraction of slot information using "[[" |
"[[",ANY-methods |
Extraction of slot information using "[[" |
"[[",genericFunction-method |
Extraction of slot information using "[[" |
"[["-method |
Extraction of slot information using "[[" |
"[[-methods" |
Extraction of slot information using "[[" |
"[[-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
"[[-methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
"[[<-" |
Replacement and/or Addition of new slot or indexed elements using "[[<-" |
"[[<-"-methods |
Replacement and/or Addition of new slot or indexed elements using "[[<-" |
"[[<-"-methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
"[[<--methods" |
Replacement and/or Addition of new slot or indexed elements using "[[<-" |
"[[<--methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
"[[<--methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
checkvars |
Checks the ranges, dimensions, and names of the metadata based on the current data of an FCS R-object. |
checkvars,FCS-method |
Class "FCS" : Flow Cytometry Standard |
checkvars-methods |
Checks the ranges, dimensions, and names of the metadata based on the current data of an FCS R-object. |
coerce,ANY,array-method |
Coercing an object class to another class |
coerce,ANY,call-method |
Coercing an object class to another class |
coerce,ANY,character-method |
Coercing an object class to another class |
coerce,ANY,complex-method |
Coercing an object class to another class |
coerce,ANY,environment-method |
Coercing an object class to another class |
coerce,ANY,expression-method |
Coercing an object class to another class |
coerce,ANY,function-method |
Coercing an object class to another class |
coerce,ANY,integer-method |
Coercing an object class to another class |
coerce,ANY,list-method |
Coercing an object class to another class |
coerce,ANY,logical-method |
Coercing an object class to another class |
coerce,ANY,matrix-method |
Coercing an object class to another class |
coerce,ANY,name-method |
Coercing an object class to another class |
coerce,ANY,NULL-method |
Coercing an object class to another class |
coerce,ANY,numeric-method |
Coercing an object class to another class |
coerce,ANY,single-method |
Coercing an object class to another class |
coerce,ANY,ts-method |
Coercing an object class to another class |
coerce,ANY,vector-method |
Coercing an object class to another class |
coerce,cytoFrame,FCS-method |
Convert Data Objects |
coerce,data.frame,FCS-method |
Class "FCS" : Flow Cytometry Standard |
coerce,FCS,cytoFrame-method |
Convert Data Objects |
coerce,FCS,data.frame-method |
Class "FCS" : Flow Cytometry Standard |
coerce,FCS,matrix-method |
Class "FCS" : Flow Cytometry Standard |
coerce,matrix,FCS-method |
Class "FCS" : Flow Cytometry Standard |
coerce-methods |
Coercing an object class to another class |
colnames,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
colnames<-,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
ContourScatterPlot |
Image and Contour Bivariate Plot |
convertS3toS4 |
Converts S3 class FCS object to S4 class FCS object |
createGate |
Gating of a FCS object: Making a Gating/Selection index column for subsequent extraction |
cytoSet-class |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
FCS |
Class "FCS" : Flow Cytometry Standard |
FCS-class |
Class "FCS" : Flow Cytometry Standard |
FCS.type |
Objects providing parameters for the raw FCS file types |
fcs.type |
Objects providing parameters for the raw FCS file types |
fcs.type.cellquest.3.1.FACS.Vantage |
Objects providing parameters for the raw FCS file types |
fcs.type.cellquest.3.1.FACScan |
Objects providing parameters for the raw FCS file types |
fcs.type.cellquest.3.3 |
Objects providing parameters for the raw FCS file types |
fcs.type.default |
Objects providing parameters for the raw FCS file types |
fcs.type.DiVa1024 |
Objects providing parameters for the raw FCS file types |
fcs.type.FACSCalibur1024 |
Objects providing parameters for the raw FCS file types |
fcs.type.facscan1024 |
Objects providing parameters for the raw FCS file types |
fcs.type.facscan256 |
Objects providing parameters for the raw FCS file types |
fcs.type.FACStar256 |
Objects providing parameters for the raw FCS file types |
fcs.type.LSR1024 |
Objects providing parameters for the raw FCS file types |
fcs.type.LSR256 |
Objects providing parameters for the raw FCS file types |
fcs.type.LYSYS |
Objects providing parameters for the raw FCS file types |
FCSgate |
Class "FCSgate" Flow Cytometry Standard extension to gating |
FCSgate-class |
Class "FCSgate" Flow Cytometry Standard extension to gating |
FCSggobi |
Class "FCSggobi" : Dynamic Plots |
FCSggobi-class |
Class "FCSggobi" : Dynamic Plots |
FCSmetadata |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
FCSmetadata-class |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
FCSsummary |
Class "FCSsummary" Summary object for a "FCS-class" |
FCSsummary-class |
Class "FCSsummary" Summary object for a "FCS-class" |
FHCRC.HVTNFCS |
Fred Hutchinson Cancer Research Center Sequential Gating Procedure proposed by Julie McElrath's Lab |
fixvars |
Checks and fixes the ranges, dimensions, and names of the metadata based on the current data of an FCS R-object. |
fixvars,FCS-method |
Class "FCS" : Flow Cytometry Standard |
fixvars-methods |
Checks and fixes the ranges, dimensions, and names of the metadata based on the current data of an FCS R-object. |
fluors |
Obtaining the Data of Fluorescence Measurements from a FCS object |
fluors,FCS-method |
Class "FCS" : Flow Cytometry Standard |
fluors-methods |
Obtaining the Data of Fluorescence Measurements from a FCS object |
pairs.CSP |
Contour/Hexbin Scatterplot Matrices |
parallelCoordinates |
Parallel coordinates: Plotting each observation across all variables |
pData,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
percentile.FCS |
Calculate the Percent Positive given a percentile |
PercentPos.FCS |
Calculate the Percent Positive given a percentile |
phenoData,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
phenoData<-,cytoSet,phenoData-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
pkci2 |
Testing the difference of upper-tail distributions of two samples |
plot,ANY,ANY-method |
Graphical representation of an object |
plot,FCS,missing-method |
Class "FCS" : Flow Cytometry Standard |
plot-methods |
Graphical representation of an object |
plot.ProbBin.FCS |
Plots a ProbBin.FCS object |
plot2sets.FCS |
Create a scatterplot to summaryze and compare two series of FCS objects |
plotdensity.FCS |
Create density plots one parameter of one (or more) FCS object(s) |
plotECDF.FCS |
Create a empirical cumulative distribution plot for one (or more) parameter(s) of one (or more) FCS object(s) |
plotQA.FCS |
Create a scatterplot summaryzing one (or two) parameter(s) for several FCS objects stored in a plate |
plotvar.FCS |
Making Univariate/Bivariate plots of the column variables of a FCS object |
print,ANY-method |
Printing an object |
print,FCS-method |
Class "FCS" : Flow Cytometry Standard |
print,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
print,FCSsummary-method |
Class "FCSsummary" Summary object for a "FCS-class" |
print-methods |
Printing an object |
print-methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
print-methods,FCSsummary-method |
Class "FCSsummary" Summary object for a "FCS-class" |
ProbBin.by.control |
Test the equivalence of two univariate sample distributions by using Probability Binning and plots the probability-binned histograms of the two samples |
ProbBin.combined |
Test the equivalence of two univariate sample distributions by using Probability Binning and plots the probability-binned histograms of the two samples |
ProbBin.FCS |
ProbBin.FCS R-object: Probability binning of 2 samples |
ProbBin.flowcytest |
Test the equivalence of two univariate sample distributions by using Probability Binning and plots the probability-binned histograms of the two samples |
show,ANY-method |
Showing an object |
show,classRepresentation-method |
Showing an object |
show,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
show,FCS-method |
Class "FCS" : Flow Cytometry Standard |
show,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
show,FCSsummary-method |
Class "FCSsummary" Summary object for a "FCS-class" |
show,genericFunction-method |
Showing an object |
show,MethodDefinition-method |
Showing an object |
show,MethodWithNext-method |
Showing an object |
show,ObjectsWithPackage-method |
Showing an object |
show,traceable-method |
Showing an object |
show-methods |
Showing an object |
show-methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
show-methods,FCSsummary-method |
Class "FCSsummary" Summary object for a "FCS-class" |
showgate.FCS |
Showing the gate and the datapoints within the gate on a prevous plot |
standard |
Estimate the critical bandwidth for specific number of modes |
summary,"ANY-method" |
Summary of object |
summary,FCS-method |
Class "FCS" : Flow Cytometry Standard |
summary,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
summary-methods |
Summary of object |
summary-methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
summary.ProbBin.FCS |
Chi-Squared/Standard Normal Approximation Summary Statistics for a ProbBin.FCS object |
[,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
[,FCS,ANY,ANY,ANY-method |
Extraction of slot information using "[" |
[,FCS-method |
Class "FCS" : Flow Cytometry Standard |
[,FCSmetadata,ANY,ANY,ANY-method |
Extraction of slot information using "[" |
[,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
[-methods |
Extraction of slot information using "[" |
[-methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
[<-,ANY-method |
Replacement and/or Addition of new slot or indexed elements using "[<-" |
[<-,FCS,ANY,ANY-method |
Extraction of slot information using "[" |
[<-,FCS-method |
Class "FCS" : Flow Cytometry Standard |
[<-,FCSmetadata,ANY,ANY-method |
Extraction of slot information using "[" |
[<-,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
[<-,genericFunction-method |
Replacement and/or Addition of new slot or indexed elements using "[<-" |
[<--methods |
Replacement and/or Addition of new slot or indexed elements using "[<-" |
[<--methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
[[,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
[[,FCS,ANY,ANY-method |
Extraction of slot information using "[[" |
[[,FCS-method |
Class "FCS" : Flow Cytometry Standard |
[[,FCSmetadata,ANY,ANY-method |
Extraction of slot information using "[[" |
[[,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
[[-method |
Extraction of slot information using "[[" |
[[-methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
[[<-,ANY-method |
Replacement and/or Addition of new slot or indexed elements using "[[<-" |
[[<-,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
[[<-,FCS, ANY, ANY |
Class "FCS" : Flow Cytometry Standard |
[[<-,FCS,ANY,ANY-method |
Extraction of slot information using "[[" |
[[<-,FCS-method |
Class "FCS" : Flow Cytometry Standard |
[[<-,FCSmetadata,ANY,ANY-method |
Extraction of slot information using "[[" |
[[<-,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
[[<-,genericFunction-method |
Replacement and/or Addition of new slot or indexed elements using "[[<-" |
[[<--methods |
Replacement and/or Addition of new slot or indexed elements using "[[<-" |
[[<--methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |