Model-class {rsbml} | R Documentation |
The central SBML element. Contains the Species
,
Reaction
s, Compartment
s and other
components of the model. See the SBML specification, at the reference, for
further details.
Objects can be created by calls of the form new("Model", ...)
.
id
:"character"
uniquely identifying this component. name
:"character"
naming this component. functionDefinitions
:"list"
containing
FunctionDefinition
s.unitDefinitions
:"list"
containing
UnitDefinition
s. compartments
:"list"
containing
Compartment
s. species
:"list"
containing
Species
s. parameters
:"list"
containing
Parameter
s. rules
:"list"
containing
Rule
s. reactions
:"list"
containing
Reaction
s. events
:"list"
containing
Event
s. layouts
:"list"
containing
Layout
s. speciesTypes
:"list"
containing
SpeciesType
s.compartmentTypes
:"list"
containing
CompartmentType
s.constraints
:"list"
containing
Constraint
s.initialAssignments
:"list"
containing
InitialAssignment
s.modelHistory
:ModelHistory
recording the history of the
model.metaId
:"character"
that is an XML ID
"described" by an RDF resource. This links an SBML element to an RDF
resource. RDF may appear anywhere in an SBML element,
but is usually placed inside the annotation
element.notes
:"character"
containing user-readable XHTML notes about an element. annotation
:"character"
containing
additional machine-readable information about an element, usually as RDF,
such as BioPAX. This is where application-specific data belongs.cvTerms
:"list"
containing
instances of CVTerm
associated with this
element.sboTerm
:"integer"
identifying
a term in the Systems Biology Ontology (SBO).
Class "SBase"
, directly.
signature(object = "Model")
: gets the id
slot signature(object = "Model")
: sets the id
slot signature(object = "Model")
: gets the name
slot signature(object = "Model")
: sets the name
slot signature(object = "Model")
: gets the compartments
slot signature(object = "Model")
: sets the compartments
slot signature(object = "Model")
: gets the events
slot signature(object = "Model")
: sets the events
slot signature(object = "Model")
: gets the functionDefinitions
slot signature(object = "Model")
: sets the functionDefinitions
slot signature(object = "Model")
: gets the layouts
slot signature(object = "Model")
: sets the layouts
slot signature(object = "Model")
: gets the parameters
slot signature(object = "Model")
: sets the parameters
slot signature(object = "Model")
: gets the species
slot signature(object = "Model")
: sets the species
slot signature(object = "Model")
: gets the reactions
slot signature(object = "Model")
: sets the reactions
slot signature(object = "Model")
: gets the rules
slot signature(object = "Model")
: sets the rules
slot signature(object = "Model")
: gets the unitDefinitions
slot signature(object = "Model")
: sets the unitDefinitions
slot signature(object = "Model")
: gets the compartmentTypes
slot signature(object = "Model")
: sets the compartmentTypes
slot signature(object = "Model")
: gets the constraints
slot signature(object = "Model")
: sets the constraints
slot signature(object = "Model")
: gets the initialAssignments
slot signature(object = "Model")
: sets the initialAssignments
slot signature(object = "Model")
: gets the speciesTypes
slot signature(object = "Model")
: sets the
speciesTypes
slot signature(object = "Model")
: gets the modelHistory
slot signature(object = "Model")
: sets the modelHistory
slot
Michael Lawrence