Species-class {rsbml} | R Documentation |
A participant in an SBML model.
Objects can be created by calls of the form new("Species", ...)
.
id
:"character"
uniquely identifying this component. name
:"character"
naming this component. compartment
:"character"
identifying the
compartment in which this species is located.initialAmount
:"numeric"
indicating the
initial amount for this species (mutually exclusive with initialConcentration
).initialConcentration
:"numeric"
indicating the
initial concentration for this species (mutually exclusive with initialAmount
).substanceUnits
:"character"
identifying the
units for the amount of this species or the numerator of the concentration.spatialSizeUnits
:"character"
identifying the
units for the denominator of the species concentration.hasOnlySubstanceUnits
:"logical"
indicating
whether the quantity of this species is specified as an amount or a concentration.boundaryCondition
:"logical"
. If TRUE
,
indicates that the quantity of this species cannot be changed by a reaction.charge
:"integer"
indicating the electrical
charge of this species.constant
:"logical"
indicating whether
the quantity of this species can change.units
:"character"
, deprecated. metaId
:"character"
that is an XML ID
"described" by an RDF resource. This links an SBML element to an RDF
resource. RDF may appear anywhere in an SBML element,
but is usually placed inside the annotation
element.notes
:"character"
containing user-readable XHTML notes about an element. annotation
:"character"
containing
additional machine-readable information about an element, usually as RDF,
such as BioPAX. This is where application-specific data belongs.cvTerms
:"list"
containing
instances of CVTerm
associated with this
element.sboTerm
:"integer"
identifying
a term in the Systems Biology Ontology (SBO).
Class "SBase"
, directly.
signature(object = "Species")
: gets the id
slot signature(object = "Species")
: sets the id
slot signature(object = "Species")
: gets the name
slot signature(object = "Species")
: sets the name
slot signature(object = "Species")
: gets the boundaryCondition
slot signature(object = "Species")
: sets the boundaryCondition
slot signature(object = "Species")
: gets the charge
slot signature(object = "Species")
: sets the charge
slot signature(object = "Species")
: gets the compartment
slot signature(object = "Species")
: sets the compartment
slot signature(object = "Species")
: gets the constant
slot signature(object = "Species")
: sets the constant
slot signature(object = "Species")
: gets the constant
slot signature(object = "Species")
: sets the constant
slot signature(object = "Species")
: gets the hasOnlySubstanceUnits
slot signature(object = "Species")
: sets the hasOnlySubstanceUnits
slot signature(object = "Species")
: gets the initialAmount
slot signature(object = "Species")
: sets the initialAmount
slot signature(object = "Species")
: gets the initialConcentration
slot signature(object = "Species")
: sets the initialConcentration
slot signature(object = "Species")
: gets the spatialSizeUnits
slot signature(object = "Species")
: sets the spatialSizeUnits
slot signature(object = "Species")
: gets the substanceUnits
slot signature(object = "Species")
: sets the substanceUnits
slot Michael Lawrence