Layout-class {rsbml} | R Documentation |
Contains the glyphs and other graphical objects that compose an SBML layout. Layouts are not part of the core SBML specification. See the reference for the SBML layout extension specification.
Objects can be created by calls of the form new("Layout", ...)
.
id
:"character"
uniquely identifying this component. dimensions
:"Dimensions"
specifing the
size of the layout.compartmentGlyphs
:"list"
containing the
CompartmentGlyph
s.speciesGlyphs
:"list"
containing the
SpeciesGlyph
s. reactionGlyphs
:"list"
containing the
ReactionGlyph
s. textGlyphs
:"list"
containing the
TextGlyph
s. additionalGraphicalObjects
:"list"
containing the
additional GraphicalObject
s that are not bound to any model component. metaId
:"character"
that is an XML ID
"described" by an RDF resource. This links an SBML element to an RDF
resource. RDF may appear anywhere in an SBML element,
but is usually placed inside the annotation
element.notes
:"character"
containing user-readable XHTML notes about an element. annotation
:"character"
containing
additional machine-readable information about an element, usually as RDF,
such as BioPAX. This is where application-specific data belongs.cvTerms
:"list"
containing
instances of CVTerm
associated with this
element.sboTerm
:"integer"
identifying
a term in the Systems Biology Ontology (SBO).
Class "SBase"
, directly.
signature(object = "Layout")
: gets the id
slot signature(object = "Layout")
: sets the id
slot signature(object = "Layout")
: gets the additionalGraphicalObjects
slot signature(object = "Layout")
: sets the additionalGraphicalObjects
slot signature(object = "Layout")
: gets the compartmentGlyphs
slot signature(object = "Layout")
: sets the compartmentGlyphs
slot signature(object = "Layout")
: gets the dimensions
slot signature(object = "Layout")
: sets the dimensions
slot signature(object = "Layout")
: gets the reactionGlyphs
slot signature(object = "Layout")
: sets the reactionGlyphs
slot signature(object = "Layout")
: gets the speciesGlyphs
slot signature(object = "Layout")
: sets the speciesGlyphs
slot signature(object = "Layout")
: gets the textGlyphs
slot signature(object = "Layout")
: sets the textGlyphs
slot Michael Lawrence
http://projects.villa-bosch.de/bcb/sbml