argoView-class {rtracklayer}R Documentation

Class "argoView"

Description

An object representing a view of a genome in the Argo browser.

Objects from the Class

Objects may be created through calls of the form browserView(session, ...) where session is an instance of argoSession.

Slots

jref:
Object of class "jobjRef" holding a reference to the low-level Argo object.
session:
Object of class "browserSession" to which this view belongs.

Extends

Class "browserView", directly.

Methods

activeView(object)
Returns a logical indicating whether this view is the active view.
close(con)
Closes this view.
genomeSegment(object)
Obtains the genomeSegment displayed by this view.
genomeSegment(object) <- value
Sets the genomeSegment displayed by the view.
tracks(object)
Gets the names of the visible tracks.
tracks<-(object)
Sets the visible tracks by name. Note that in Argo track visibility is global.

Author(s)

Michael Lawrence

See Also

browserView for creating instances from a argoSession.


[Package rtracklayer version 1.2.2 Index]