all.present.in.group {simpleaffy}R Documentation

Filter by PMA call

Description

Filters an object by PMA calls. Must be called present in at leset 'no' elements in at least one of the replicate sets in the factor 'group'

Usage

  all.present.in.group(x,group,members,calls,no = "all")

Arguments

x An object to filter
group The factor to filter by
members The members in the group to check. If null, checks all possible ones
calls A matrix of PMA calls
no How many in a row to pass the filter? If 'all' then all must be present

Value

A probesetid

Author(s)

Crispin J Miller

Examples

  ## Not run: 
     all.present.in.group(eset,calls,"line",dim(calls)[2])
  
## End(Not run)

[Package simpleaffy version 2.18.0 Index]