PairComp-class {simpleaffy} | R Documentation |
Holds fold-change, ttest p-score and detection p-value calls(if used) between a pair of experimental factors.
means
:"matrix"
Mean values for each of the experimental factors.fc
:"numeric"
Fold change between the means.tt
:"numeric"
P-score between the factors.calls
:"matrix"
Detection p-values for each probeset on each array.group
:"character"
The name of the factor that was compared.members
:"character"
A list containing the two levels compared between.pData
:"pData"
The phenoData for the members that were compared.calculated.from
:"ExpressionSet"
The original expression set that was being compared.signature(x = "PairComp")
: get the values for the specified gene(s).signature(x = "PairComp")
: not supported.signature(object = "PairComp")
: the detection.p.values.signature(object = "PairComp")
: the fold-changes.signature(object = "PairComp")
: the name of the group that was compared.signature(object = "PairComp")
: the means of the two experimental factors that were compared.signature(object = "PairComp")
: the members of that group that were compared.signature(object = "PairComp")
: Take a PairComp
object and filter it to yield probesets that pass the specified criteria.signature(object = "PairComp")
: the results of a ttest between groups.signature(object = "pData")
: The phenoData from the members that were compared.signature(object = "ExpressionSet")
: The original expression set.Crispin Miller