qc.have.params {simpleaffy} | R Documentation |
Simpleaffy requires a definition file describing the qc probes,
spikes, alpha values, etc. for the array of interest. This is used to
initialize the QC environment for the array (usually implicitly within
the qc
function), by a call to
setQCEnvironment
. This function can be used
to see if the specified array has a definition file.
qc.have.params(name)
name |
The 'clean' CDF name of the array (i.e. the result of calling
cleancdfname on the cdfName of the AffyBatch object containing the
array data of interest. |
True or False
Crispin J Miller
http://bioinformatics.picr.man.ac.uk/
setQCEnvironment
qc
qc.ok
cdfName
cleancdfname
qc.have.params("nosucharraycdf") qc.have.params("hgu133plus2cdf") setQCEnvironment("hgu133plus2cdf") qc.have.params(cleancdfname("HG-U133_Plus_2"))