trad.scatter.plot {simpleaffy} | R Documentation |
Plots expression data as a scatter plot with optional fold-change lines
trad.scatter.plot(x, y, add = FALSE, fc.lines = log2(c(2, 4, 6, 8)), draw.fc.lines = TRUE, draw.fc.line.labels = TRUE, fc.line.col = "lightgrey", pch = 20,xlim=NULL,ylim=NULL, ...)
x |
x coords |
y |
y coords |
add |
add this data to an existing graph |
fc.lines |
Vector of intervals at which to draw fold-change lines |
draw.fc.lines |
Draw fold change lines? |
draw.fc.line.labels |
Label the fold change lines with the fold changes they represent? |
fc.line.col |
The colour to draw fold change lines |
pch |
Plotting character to use for the scatter data (see plot for more details) |
xlim |
Range for the xaxis |
ylim |
Range for the yaxis |
... |
Additional parameters to pass through to the underlying plot function |
Crispin J Miller
http://bioinformatics.picr.man.ac.uk/
## Not run: trad.scatter.plot(exprs(eset.rma)[,1],exprs(eset.rma)[,4]) ## End(Not run)