find.param.five {snapCGH}R Documentation

Yields the output in a model with five underlying states

Description

This function is a workhorse of the process.data function. It outputs state means/variances and transitions matrices in the model with five states.

Usage

find.param.five(output.optim,var.fixed)

Arguments

output.optim output of the optimisation with 5 underlying states
var.fixed Logical variable - TRUE if you want to fix the variance to be the same across states

Value

Outputs the mean/variance, transition matrix, maximised likelihood and convergence information

Author(s)

John Marioni


[Package snapCGH version 1.10.0 Index]