find.param.three {snapCGH} | R Documentation |
This function provides the output (means/variances, transition matrix, likelihood) when the heterogeneous HMM is fitted with three underlying states. It is a workhorse of the process.data function.
find.param.three(output.optim,var.fixed)
output.optim |
The output from fitting a heterogeneous HMM when there are four underlying states |
var.fixed |
Logical variable - TRUE if you want the variances to be tied across states. Defaults to FALSE |
This function outputs the state means/variances, transition matrices, rate parameters, maximised likelihood and convergence information provided by fitting a heterogeneous HMM with three underlying states.
John Marioni