removeByWeights {snapCGH}R Documentation

Remove clones based on a weights matrix

Description

An example function to be used by the filterClones method. This function takes an MA list, a weights matrix and a threshold and returns the indices of any clones with weight below the threshold.

Usage

        removeByWeights(MA, weights=MA$weights, threshold = 0.2)

Arguments

MA An object of class MAList
weights A matrix with the same dimensions as MA containing weight information.
threshold Threshold value. Any clones with weight below this are removed.

Author(s)

Mike Smith

See Also

filterClones


[Package snapCGH version 1.10.0 Index]