Viterbi.three {snapCGH} | R Documentation |
A work horse of the fit.model function. It uses a scaled version of the Viterbi algorithm to allocate clones to one of three underlying states as fitted using a heterogeneous HMM.
Viterbi.three(y, BFGS.output, BFGS.trans)
y |
the data to be allocated to states |
BFGS.output |
The output obtained from the find.param.three function |
BFGS.trans |
A list of the heterogeneous transition matrices |
A vector of numbers indicating to which state clones are allocated to.
John Marioni