Viterbi.five {snapCGH} | R Documentation |
A work horse of the fit.model function. It uses a scaled version of the Viterbi algorithm to allocate clones to one of five underlying states as fitted using a heterogeneous HMM.
Viterbi.five(y, BFGS.output, BFGS.trans.mat)
y |
the data to be allocated to states |
BFGS.output |
The output obtained from the find.param.five function |
BFGS.trans.mat |
A list of the heterogeneous transition matrices |
A vector of numbers indicating to which state clones are allocated to.
John Marioni