snp.reg.imputation-class {snpMatrix} | R Documentation |
A class defining a list of regression equations, or "rules", for imputation of SNPs
Objects are lists of rules. Rules are named list elements each describing imputation of a SNP by a linear regression equation. Each element is itself a list with the following elements:
snps
.
If any target SNP is monomorphic, the corresponding rule is
returned as NULL
.
signature(object = "snp.reg.imputation")
: prints
an abreviated listing of the rulessignature(object = "snp.reg.imputation")
:
returns a table which shows the distribution of r-squared values
achieved against the number of snps used for imputationsignature(x="snp.reg.imputation", y="missing")
:
plots the distribution of r-squared values as a stacked bar chartsignature(x = "snp.reg.imputation", i = "ANY")
: subset
operationsDavid Clayton david.clayton@cimr.cam.ac.uk
snp.imputation
, impute.snps
,
single.snp.tests
showClass("snp.reg.imputation")