SPIKE_IN95 {spikeLI} | R Documentation |
This dataset contains a set of gene names contained in the HGU95 dataset
data(SPIKE_IN95)
The set of spike-in gene names contained in the HGU dataset
This data is experimental data extracted from the publicly available HGU dataset
E. Carlon and T. Heim, Physica A 362, 433 (2006).
Ivsc
, IvsDG
, collapse
, SPIKE_IN
, hgu
, SPIKE_INA
, SPIKE_INB
, SPIKE_INH
## you can first check if the data matches the predicted hybridisation value according to the langmuir ## value, from the intensity versus the concentration value Ivsc(SPIKE_IN95[1]) ## you can then plot the value of the Intensity of the probe with the predicted value of the hybridisation ## according to the Delta G, value IvsDG(SPIKE_IN95[4],128) ## The collapse function will finally plot all the values of the probe set according to ## the langmuir absorption theory collapse(SPIKE_IN95[2]) ## By comparing the matched value and the mismatches, you will be able to identify errors which ## could have done while sampling the data, or if the error happens repeatedly this will show errors ## which will have happened while sequencing old data.