SPIKE_IN95 {spikeLI}R Documentation

set of spike-in genes contained in the HGU95 dataset

Description

This dataset contains a set of gene names contained in the HGU95 dataset

Usage

data(SPIKE_IN95)

Format

The set of spike-in gene names contained in the HGU dataset

Source

This data is experimental data extracted from the publicly available HGU dataset

References

E. Carlon and T. Heim, Physica A 362, 433 (2006).

See Also

Ivsc, IvsDG, collapse, SPIKE_IN, hgu , SPIKE_INA, SPIKE_INB, SPIKE_INH

Examples

## you can first check if the data matches the predicted hybridisation value according to the langmuir 
## value, from the intensity versus the concentration value
Ivsc(SPIKE_IN95[1])

## you can then plot the value of the Intensity of the probe with the predicted value of the hybridisation
## according to the Delta G, value
IvsDG(SPIKE_IN95[4],128)

## The collapse function will finally plot all the values of the probe set according to 
## the langmuir absorption theory

collapse(SPIKE_IN95[2])

## By comparing the matched value and the mismatches, you will be able to identify errors which 
## could have done while sampling the data, or if the error happens repeatedly this will show errors 
## which will have happened while sequencing old data.

[Package spikeLI version 1.10.0 Index]