plot.SpliceSitesGenomic {splicegear} | R Documentation |
Function to plot SpliceSitesGenomic objects.
## S3 method for class 'SpliceSitesGenomic': plot(x, col.variant = par("col"), col.exon = "white", split = FALSE, main = names(x@variants), ...)
x |
SpliceSitesGenomic-class |
col.variant |
a vector of colors for the different variants. The colors are recycled as necessary. |
col.exon |
|
split |
split the plot of the variants in individual plots |
main |
character to use as a title. Recycled as necessary. |
... |
optional graphical parameters |
This function is used for its side-effect.
Laurent
## a 10 bp window seq.length <- as.integer(10) ## positions of the exons spsiteIpos <- matrix(c(1, 3.5, 5, 9, 3, 4, 8, 10), nc=2) ## known variants variants <- list(a=c(1,2,3,4), b=c(1,2,3), c=c(1,3,4)) ## n.exons <- nrow(spsiteIpos) spvar <- new("SpliceSitesGenomic", spsiteIpos=spsiteIpos, variants=variants, seq.length=seq.length) par(mfrow = c(3,1), mar = c(3.1, 2.1, 2.1, 1.1)) plot(spvar, split=TRUE, col.exon=rainbow(n.exons))