stamLeaf-class {stam} | R Documentation |
Objects of this class represent leaf nodes in a classifier net as it is used by structured analysis of microarray data. These are the only nodes which have genes annotated.
Objects can be created by calls of the form
new("stamLeaf", ID, chip, probesidx)
.
ID
chip
probes
chip
:"character"
, the name of the chip for
which the classifier net is generated.probes
:"numeric"
, for each probeset holds its
position in the expression metrices to be analyzed pamfit
:"nsc"
, holds the results of pamr.train
restricted to the genes annotated to the current leaf node.delta
:"numeric"
, stores the best delty for the
local pamfit as determined by pamr.cv.
See stamNode-class
fot ID
, category
, replacedParents
and
supNode
.
Class "stamNode"
, directly.
signature(x = "stamLeaf")
: print information on the leaf node.signature(x = "stamLeaf")
: generate HTML information on the
leaf node.Claudio Lottaz
stamNode-class
, stamINode-class