UniFilter-class {xps} | R Documentation |
Class UniFilter allows to apply different unitest filters to class ExprTreeSet
,
i.e. to the expression level data.frame data
.
Objects can be created by calls of the form new("UniFilter", ...)
.
Alternatively, the contructor UniFilter
can be used.
foldchange
:"list"
describing parameters for fcFilter
.prescall
:"list"
describing parameters for callFilter
.unifilter
:"list"
describing parameters for unitestFilter
.unitest
:"list"
describing parameters for uniTest
.numfilters
:"numeric"
giving the number of filters applied.
Class "Filter"
, directly.
signature(object = "UniFilter")
: extracts slot prescall
.signature(object = "UniFilter", value = "character")
: replaces
slot prescall
with character vector c(cutoff, samples, condition).signature(object = "UniFilter")
: extracts slot foldchange
.signature(object = "UniFilter", value = "numeric")
: replaces
slot foldchange
with numeric vector c(cutoff, direction).signature(object = "UniFilter")
: extracts slot unitest
.signature(object = "UniFilter", value = "character")
: replaces
slot unitest
with character vector c(type, alternative, correction, numperm, mu, paired, conflevel, varequ).signature(object = "UniFilter")
: extracts slot unifilter
.signature(object = "UniFilter", value = "character")
: replaces
slot unifilter
with character vector c(cutoff, variable).Christian Stratowa
related classes Filter
, PreFilter
.
unifltr <- new("UniFilter", unitest=list("t.test")) fcFilter(unifltr) <- c(1.5,"both") unitestFilter(unifltr) <- c(0.01,"pval") str(unifltr)