boxplot.dev {xps}R Documentation

Box Plots for Device

Description

Produce box-and-whisker plot(s) of the samples for the selected device.

Usage

boxplot.dev(x, which = "", size = 0, transfo = log2, range = 0, names = "namepart", mar = c(10, 5, 4, 1), las = 2, dev = "screen", outfile = "BoxPlot", w = 800, h = 540, ...)

Arguments

x object of class DataTreeSet or ExprTreeSet.
which type of probes to be used, for details see validData.
size length of sequence to be generated as subset.
transfo a valid function to transform the data, usually log2, or 0.
range determines how far the plot whiskers extend out from the box.
names optional vector of sample names.
mar plot margin.
las style of axis labels.
dev graphics device to plot to, i.e. one of “screen”, “jpeg”,“png”, “pdf” or “ps”.
outfile the name of the output file.
w the width of the device in pixels.
h the height of the device in pixels.
... optional arguments to be passed to boxplot.

Details

Produces a boxplot for slot data for an object of class DataTreeSet or ExprTreeSet for the selected graphics device.

Note

For a DataTreeSet object, data must first be attached using method attachInten.

Author(s)

Christian Stratowa

See Also

boxplot


[Package xps version 1.2.10 Index]