CallTreeSet-class {xps} | R Documentation |
This class provides the link to the ROOT
call file and
the ROOT
trees contained therein. It extends class ProcesSet
.
Objects are created using functions mas5.call
or dabg.call
, respectively.
calltype
:"character"
representing the call type,
i.e. ‘mas5’ or ‘dabg’.detcall
:"data.frame"
. The data.frame can contain
the detection calls stored in ROOT
call trees.scheme
:"SchemeTreeSet"
providing access to
ROOT
scheme file.data
:"data.frame"
. The data.frame can contain
the data (i.e. p-values) stored in ROOT
call trees.params
:"list"
representing relevant parameters.setname
:"character"
representing the name to the
ROOT
file subdirectoy where the ROOT
call trees are stored,
usually ‘CallTreeSet’.settype
:"character"
describing the type of treeset
stored in setname
, usually ‘preprocess’.rootfile
:"character"
representing the name
of the ROOT
call file, including full path.filedir
:"character"
describing the full path to
the system directory where rootfile
is stored.numtrees
:"numeric"
representing the number of
ROOT
trees stored in subdirectoy setname
.treenames
:"list"
representing the names of the
ROOT
trees stored in subdirectoy setname
.
Class "ProcesSet"
, directly.
Class "TreeSet"
, by class "ProcesSet", distance 2.
signature(object = "CallTreeSet")
: exports detection call data from
ROOT
call file and and saves as data.frame detcall
.signature(object = "CallTreeSet")
: exports call p-values from
ROOT
call file and and saves as data.frame data
.signature(x = "CallTreeSet")
: creates a barplot of percent present
and absent calls.signature(object = "CallTreeSet")
: extracts the detection call data.frame.signature(object = "CallTreeSet", value = "data.frame")
: replaces the detection call data.frame.signature(object = "CallTreeSet")
: extracts the detection p-value data.frame.signature(object = "CallTreeSet", value = "data.frame")
: replaces the detection p-value data.frame.signature(object = "CallTreeSet")
: replaces data.frame detcall
with an empty data.frame of dim(0,0).signature(object = "CallTreeSet")
: replaces data.frame data
with an empty data.frame of dim(0,0).signature(object = "CallTreeSet")
: extracts a subset of columns
from data.frame detcall
.Christian Stratowa
related classes DataTreeSet
, ExprTreeSet
.
showClass("CallTreeSet")