write.sgr {ACME} | R Documentation |
The affy Integrated Genome Browser (IGB) is a powerful, fast browser for genomic data. The file format is simple (three columns: chromosome, location, and score) to generate. This function will write the sgr files associated with a aGFFcalc object. There will be either one or two files (default two) representing the raw data and the calculated data (which is output as -log10(val) for visualization purposes).
write.sgr(agff, raw = TRUE, vals = TRUE, directory = ".")
agff |
An aGFFCalc object obtained after running do.aGFF.calc |
raw |
Create a file for the raw data? |
vals |
Create a file for the calculated p-values? |
directory |
Give a directory for storing the files |
Sean Davis
data(example.agff) write.sgr(example.agff)