AffyQA {AffyExpress}R Documentation

Microarray quality control and assessment

Description

Create quality control report in an HTML file that contains a set of assessment plots, including Affymetrix recommended quality assessment, RNA quality assessment, sample quality assessment, quality diagnostic using PLM (pseudo-chip images and NUSE and RLE plots) in your current working directory.

Usage

AffyQA(parameters, raw, Output="AffyQA.html") 

Arguments

parameters a list of variables
raw an 'AffyBatch'
Output name of the output file

Value

This function only create an html file

Author(s)

Xiwei Wu xwu@coh.org, Xuejun Arthur Li xueli@coh.org

Examples

## Not run: 
data(testData)
AffyQA(parameters=c("group", "gender"), testData)
## End(Not run)

[Package AffyExpress version 1.8.0 Index]